PDB Entry (2rcw) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2rcw | Resolution: 2.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Poly [ADP-ribose] polymerase 1 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: P09874 (PARP1_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PARP1 | Gene ID: 142 |
Pocket Descriptors | |
Volume: 1274.88 | Depth: 22.0291 |
Hydrophobicity: 0.689243 | Drug Score: 0.574345 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: trans-4-(7-carbamoyl-1H-benzimidazol-2-yl)-1-propylpiperidinium | ||
HET ID: AAI | PubChem: 9925908 | |
DrugBank: DB07330 | ChEMBL: CHEMBL452800 | |
Canonical SMILES: CCCN1CCC(CC1)c1nc2c([nH]1)c(ccc2)C(=O)N | ||
Standard InChI: InChI=1S/C16H22N4O/c1-2-8-20-9-6-11(7-10-20)16-18-13-5-3-4-12(15(17)21)14(13)19-16/h3-5,11H,2,6-10H2,1H3,(H2,17,21)(H,18,19) | ||
Molecular Formula: C16H22N4O | Mol. Weight: 286.37207 | Heavy Atoms: 21 |
Charge: 0 | Is Chiral: False | logP: 2.8894 |
HBD: 2 | HBA: 4 | TPSA: 75.01 |
#Bonds: 24 | #Rotatable Bonds: 4 | Shape Complexity: 0.5 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 8 nM |
BindingDB | Ki : 8 nM, EC50 : 3 nM |