PDB Entry (6cby)

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Visualizer: MichelaNGLo

PDB ID: 6cby Resolution: 2.55 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: N-lysine methyltransferase SMYD2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9NRG4 (SMYD2_HUMAN) Organism: Homo sapiens
Gene Symbol: SMYD2 Gene ID: 56950
Pocket Descriptors
Volume: 369.408 Depth: 21.2957
Hydrophobicity: 0.706587 Drug Score: 0.0610001
Pocket Similarity: Calculate
Ligand
Ligand Name:   [3-(4-amino-6-methyl-1H-imidazo[4,5-c]pyridin-1-yl)-3-methylazetidin-1-yl][1-({1-[(1R)-cyclohept-2-en-1-yl]piperidin-4-yl}methyl)-1H-pyrrol-3-yl]methanone
HET ID:   EW4 PubChem:   137349288
DrugBank:   - ChEMBL:   -
Canonical SMILES:   Cc1nc(N)c2c(c1)n(cn2)C1(C)CN(C1)C(=O)c1ccn(c1)CC1CCN(CC1)[C@@H]1CCCCC=C1
Standard InChI:   InChI=1S/C29H39N7O/c1-21-15-25-26(27(30)32-21)31-20-36(25)29(2)18-35(19-29)28(37)23-11-12-33(17-23)16-22-9-13-34(14-10-22)24-7-5-3-4-6-8-24/h5,7,11-12,15,17,20,22,24H,3-4,6,8-10,13-14,16,18-19H2,1-2H3,(H2,30,32)/t24-/m0/s1
Molecular Formula:   C29H39N7O Mol. Weight:   501.66626 Heavy Atoms:   37
Charge:   0 Is Chiral:   True logP:   4.6624
HBD:   1 HBA:   8 TPSA:   85.21
#Bonds:   43 #Rotatable Bonds:   6 Shape Complexity:   0.55172414
Stereocomplexity:   0.13793103 Ligand Type:   Small Molecule
Binding Affinity
-