PDB Entry (6cby) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6cby | Resolution: 2.55 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: N-lysine methyltransferase SMYD2 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9NRG4 (SMYD2_HUMAN) | Organism: Homo sapiens |
Gene Symbol: SMYD2 | Gene ID: 56950 |
Pocket Descriptors | |
Volume: 369.408 | Depth: 21.2957 |
Hydrophobicity: 0.706587 | Drug Score: 0.0610001 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [3-(4-amino-6-methyl-1H-imidazo[4,5-c]pyridin-1-yl)-3-methylazetidin-1-yl][1-({1-[(1R)-cyclohept-2-en-1-yl]piperidin-4-yl}methyl)-1H-pyrrol-3-yl]methanone | ||
HET ID: EW4 | PubChem: 137349288 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: Cc1nc(N)c2c(c1)n(cn2)C1(C)CN(C1)C(=O)c1ccn(c1)CC1CCN(CC1)[C@@H]1CCCCC=C1 | ||
Standard InChI: InChI=1S/C29H39N7O/c1-21-15-25-26(27(30)32-21)31-20-36(25)29(2)18-35(19-29)28(37)23-11-12-33(17-23)16-22-9-13-34(14-10-22)24-7-5-3-4-6-8-24/h5,7,11-12,15,17,20,22,24H,3-4,6,8-10,13-14,16,18-19H2,1-2H3,(H2,30,32)/t24-/m0/s1 | ||
Molecular Formula: C29H39N7O | Mol. Weight: 501.66626 | Heavy Atoms: 37 |
Charge: 0 | Is Chiral: True | logP: 4.6624 |
HBD: 1 | HBA: 8 | TPSA: 85.21 |
#Bonds: 43 | #Rotatable Bonds: 6 | Shape Complexity: 0.55172414 |
Stereocomplexity: 0.13793103 | Ligand Type: Small Molecule |
Binding Affinity |
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