PDB Entry (6cbx)

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Visualizer: MichelaNGLo

PDB ID: 6cbx Resolution: 1.94 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: N-lysine methyltransferase SMYD2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9NRG4 (SMYD2_HUMAN) Organism: Homo sapiens
Gene Symbol: SMYD2 Gene ID: 56950
Pocket Descriptors
Volume: 335.36 Depth: 20.5986
Hydrophobicity: 0.703297 Drug Score: 0.0328946
Pocket Similarity: Calculate
Ligand
Ligand Name:   [3-(4-amino-6-methyl-1H-imidazo[4,5-c]pyridin-1-yl)azetidin-1-yl][1-({1-[(1R)-cyclohept-2-en-1-yl]piperidin-4-yl}methyl)-1H-pyrrol-3-yl]methanone
HET ID:   EW1 PubChem:   132471754
DrugBank:   - ChEMBL:   -
Canonical SMILES:   Cc1nc(N)c2c(c1)n(cn2)[C@@H]1CN(C1)C(=O)c1ccn(c1)C[C@@H]1CCN(CC1)[C@@H]1CCCCC=C1
Standard InChI:   InChI=1S/C28H37N7O/c1-20-14-25-26(27(29)31-20)30-19-35(25)24-17-34(18-24)28(36)22-10-11-32(16-22)15-21-8-12-33(13-9-21)23-6-4-2-3-5-7-23/h4,6,10-11,14,16,19,21,23-24H,2-3,5,7-9,12-13,15,17-18H2,1H3,(H2,29,31)/t23-/m0/s1
Molecular Formula:   C28H37N7O Mol. Weight:   487.63968 Heavy Atoms:   36
Charge:   0 Is Chiral:   True logP:   4.4883
HBD:   1 HBA:   8 TPSA:   85.21
#Bonds:   44 #Rotatable Bonds:   6 Shape Complexity:   0.53571427
Stereocomplexity:   0.14285715 Ligand Type:   Small Molecule
Binding Affinity
-