PDB Entry (4wuy)

Download

Visualizer: MichelaNGLo

PDB ID: 4wuy Resolution: 1.63 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25825497 DOI: 10.1074/jbc.M114.626861
Protein
Protein Name: N-lysine methyltransferase SMYD2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9NRG4 (SMYD2_HUMAN) Organism: Homo sapiens
Gene Symbol: SMYD2 Gene ID: 56950
Pocket Descriptors
Volume: 2150.59 Depth: 35.4491
Hydrophobicity: 0.687927 Drug Score: 0.999899
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-cyano-2'-{4-[2-(3-methyl-1H-indol-1-yl)ethyl]piperazin-1-yl}-N-[3-(pyrrolidin-1-yl)propyl]biphenyl-3-carboxamide
HET ID:   3UJ PubChem:   91623361
DrugBank:   - ChEMBL:   CHEMBL3414623
Canonical SMILES:   N#Cc1cc(cc(c1)c1ccccc1N1CCN(CC1)CCn1cc(c2c1cccc2)C)C(=O)NCCCN1CCCC1
Standard InChI:   InChI=1S/C36H42N6O/c1-28-27-42(34-11-4-2-9-32(28)34)22-19-40-17-20-41(21-18-40)35-12-5-3-10-33(35)30-23-29(26-37)24-31(25-30)36(43)38-13-8-16-39-14-6-7-15-39/h2-5,9-12,23-25,27H,6-8,13-22H2,1H3,(H,38,43)
Molecular Formula:   C36H42N6O Mol. Weight:   574.7583 Heavy Atoms:   43
Charge:   0 Is Chiral:   False logP:   5.85798
HBD:   1 HBA:   7 TPSA:   67.54
#Bonds:   48 #Rotatable Bonds:   11 Shape Complexity:   0.4
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 15 nM, IC50 : 388 nM, IC50 : 600 nM, IC50 : 1000 nM
Binding MOAD IC50 : 15 nM