PDB Entry (5kjn)

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Visualizer: MichelaNGLo

PDB ID: 5kjn Resolution: 2.72 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28002961 DOI: None
Protein
Protein Name: N-lysine methyltransferase SMYD2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9NRG4 (SMYD2_HUMAN) Organism: Homo sapiens
Gene Symbol: SMYD2 Gene ID: 56950
Pocket Descriptors
Volume: 1705.09 Depth: 42.5583
Hydrophobicity: 0.702918 Drug Score: 0.998145
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-[2-[4-[2-(1~{H}-indol-3-yl)ethyl]piperazin-1-yl]phenyl]-~{N}-(3-pyrrolidin-1-ylpropyl)pyridine-3-carboxamide
HET ID:   6TL PubChem:   122705799
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C(c1cncc(c1)c1ccccc1N1CCN(CC1)CCc1c[nH]c2c1cccc2)NCCCN1CCCC1
Standard InChI:   InChI=1S/C33H40N6O/c40-33(35-13-7-16-37-14-5-6-15-37)28-22-27(23-34-24-28)30-9-2-4-11-32(30)39-20-18-38(19-21-39)17-12-26-25-36-31-10-3-1-8-29(26)31/h1-4,8-11,22-25,36H,5-7,12-21H2,(H,35,40)
Molecular Formula:   C33H40N6O Mol. Weight:   536.7103 Heavy Atoms:   40
Charge:   0 Is Chiral:   False logP:   5.142
HBD:   2 HBA:   6 TPSA:   67.5
#Bonds:   46 #Rotatable Bonds:   11 Shape Complexity:   0.3939394
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-