PDB Entry (5kjm) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5kjm | Resolution: 2.19 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28002961 | DOI: None | |
Protein |
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Protein Name: N-lysine methyltransferase SMYD2 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9NRG4 (SMYD2_HUMAN) | Organism: Homo sapiens |
Gene Symbol: SMYD2 | Gene ID: 56950 |
Pocket Descriptors | |
Volume: 2040.51 | Depth: 37.2086 |
Hydrophobicity: 0.704641 | Drug Score: 0.99991 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-[2-[4-[2-(3,4-dichlorophenyl)ethyl]piperazin-1-yl]phenyl]-~{N}-(3-pyrrolidin-1-ylpropyl)-2~{H}-pyrazolo[3,4-b]pyridine-4-carboxamide | ||
HET ID: 6TM | PubChem: 122705798 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: Clc1ccc(cc1Cl)CCN1CCN(CC1)c1ccccc1c1nc2n[nH]cc2c(c1)C(=O)NCCCN1CCCC1 | ||
Standard InChI: InChI=1S/C32H37Cl2N7O/c33-27-9-8-23(20-28(27)34)10-15-40-16-18-41(19-17-40)30-7-2-1-6-24(30)29-21-25(26-22-36-38-31(26)37-29)32(42)35-11-5-14-39-12-3-4-13-39/h1-2,6-9,20-22H,3-5,10-19H2,(H,35,42)(H,36,37,38) | ||
Molecular Formula: C32H37Cl2N7O | Mol. Weight: 606.5885 | Heavy Atoms: 42 |
Charge: 0 | Is Chiral: False | logP: 5.8438 |
HBD: 2 | HBA: 7 | TPSA: 80.39 |
#Bonds: 48 | #Rotatable Bonds: 11 | Shape Complexity: 0.40625 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 65 nM |