PDB Entry (5h17)

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Visualizer: MichelaNGLo

PDB ID: 5h17 Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28072869 DOI: 10.1371/journal.pone.0169855
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 1779.52 Depth: 24.7968
Hydrophobicity: 0.674157 Drug Score: 0.810215
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R,4aS,10aS)-6-methoxy-3-[(3-methoxyphenyl)methyl]-1-methyl-3,4,4a,5,10,10a-hexahydro-2H-benzo[g]quinoline
HET ID:   LQE PubChem:   137349702
DrugBank:   - ChEMBL:   CHEMBL4097892
Canonical SMILES:   COc1cccc(c1)C[C@@H]1CN(C)[C@@H]2[C@@H](C1)Cc1c(C2)cccc1OC
Standard InChI:   InChI=1S/C23H29NO2/c1-24-15-17(10-16-6-4-8-20(12-16)25-2)11-19-13-21-18(14-22(19)24)7-5-9-23(21)26-3/h4-9,12,17,19,22H,10-11,13-15H2,1-3H3/t17-,19-,22-/m0/s1
Molecular Formula:   C23H29NO2 Mol. Weight:   351.48187 Heavy Atoms:   26
Charge:   0 Is Chiral:   True logP:   3.9195
HBD:   0 HBA:   3 TPSA:   21.7
#Bonds:   32 #Rotatable Bonds:   4 Shape Complexity:   0.47826087
Stereocomplexity:   0.13043478 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 890 nM