PDB Entry (5u8f)

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Visualizer: MichelaNGLo

PDB ID: 5u8f Resolution: 1.34 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28254486 DOI: 10.1016/j.bmcl.2017.02.030
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 1494.21 Depth: 27.3086
Hydrophobicity: 0.68652 Drug Score: 0.745347
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R,4S)-1-[(1S)-7-fluoro-2,3-dihydro-1H-inden-1-yl]-N,N-dimethyl-4-(1-methyl-1H-indol-3-yl)pyrrolidin-3-amine
HET ID:   82G PubChem:   123132216
DrugBank:   - ChEMBL:   CHEMBL4080018
Canonical SMILES:   CN([C@H]1CN(C[C@@H]1c1cn(c2c1cccc2)C)[C@H]1CCc2c1c(F)ccc2)C
Standard InChI:   InChI=1S/C24H28FN3/c1-26(2)23-15-28(22-12-11-16-7-6-9-20(25)24(16)22)14-19(23)18-13-27(3)21-10-5-4-8-17(18)21/h4-10,13,19,22-23H,11-12,14-15H2,1-3H3/t19-,22+,23+/m1/s1
Molecular Formula:   C24H28FN3 Mol. Weight:   377.49762 Heavy Atoms:   28
Charge:   0 Is Chiral:   True logP:   4.2722
HBD:   0 HBA:   3 TPSA:   11.41
#Bonds:   35 #Rotatable Bonds:   3 Shape Complexity:   0.41666666
Stereocomplexity:   0.16666667 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 11 nM