PDB Entry (5u8a)

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Visualizer: MichelaNGLo

PDB ID: 5u8a Resolution: 1.45 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28254486 DOI: 10.1016/j.bmcl.2017.02.030
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 368.96 Depth: 13.6294
Hydrophobicity: 0.688172 Drug Score: 0.335124
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R,4S)-1-[(2-bromo-6-fluorophenyl)methyl]-N,N-dimethyl-4-(1-methyl-1H-indol-3-yl)pyrrolidin-3-amine
HET ID:   82D PubChem:   124220776
DrugBank:   - ChEMBL:   CHEMBL4075197
Canonical SMILES:   CN([C@H]1CN(C[C@@H]1c1cn(c2c1cccc2)C)Cc1c(F)cccc1Br)C
Standard InChI:   InChI=1S/C22H25BrFN3/c1-25(2)22-14-27(13-18-19(23)8-6-9-20(18)24)12-17(22)16-11-26(3)21-10-5-4-7-15(16)21/h4-11,17,22H,12-14H2,1-3H3/t17-,22+/m1/s1
Molecular Formula:   C22H25BrFN3 Mol. Weight:   430.3564 Heavy Atoms:   27
Charge:   0 Is Chiral:   True logP:   4.5474
HBD:   0 HBA:   3 TPSA:   11.41
#Bonds:   32 #Rotatable Bonds:   4 Shape Complexity:   0.36363637
Stereocomplexity:   0.09090909 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 13 nM