PDB Entry (5u6d)

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Visualizer: MichelaNGLo

PDB ID: 5u6d Resolution: 1.64 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28254486 DOI: 10.1016/j.bmcl.2017.02.030
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 1530.24 Depth: 34.3558
Hydrophobicity: 0.68 Drug Score: 0.886657
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[4-(4-{(3S,4R)-4-(dimethylamino)-1-[(2-fluoro-6-methylphenyl)methyl]pyrrolidin-3-yl}phenyl)-1H-pyrazol-1-yl]acetamide
HET ID:   7XG PubChem:   124220775
DrugBank:   - ChEMBL:   CHEMBL4068192
Canonical SMILES:   NC(=O)Cn1ncc(c1)c1ccc(cc1)[C@H]1CN(C[C@@H]1N(C)C)Cc1c(C)cccc1F
Standard InChI:   InChI=1S/C25H30FN5O/c1-17-5-4-6-23(26)21(17)13-30-14-22(24(15-30)29(2)3)19-9-7-18(8-10-19)20-11-28-31(12-20)16-25(27)32/h4-12,22,24H,13-16H2,1-3H3,(H2,27,32)/t22-,24+/m1/s1
Molecular Formula:   C25H30FN5O Mol. Weight:   435.53702 Heavy Atoms:   32
Charge:   0 Is Chiral:   True logP:   3.6507
HBD:   1 HBA:   6 TPSA:   67.39
#Bonds:   37 #Rotatable Bonds:   7 Shape Complexity:   0.36
Stereocomplexity:   0.08 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 2.5999999046325684 nM