PDB Entry (5u5t) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5u5t | Resolution: 1.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27992714 | DOI: 10.1021/acs.jmedchem.6b01473 | |
Protein |
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Protein Name: Polycomb protein EED | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75530 (EED_HUMAN) | Organism: Homo sapiens |
Gene Symbol: EED | Gene ID: 8726 |
Pocket Descriptors | |
Volume: 1034.56 | Depth: 26.3225 |
Hydrophobicity: 0.692308 | Drug Score: 0.527293 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (3R)-3-[(2H-1,3-benzodioxol-4-yl)methyl]piperidine-1-carboximidamide | ||
HET ID: 7W7 | PubChem: 123132938 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: NC(=N)N1CCC[C@@H](C1)Cc1cccc2c1OCO2 | ||
Standard InChI: InChI=1S/C14H19N3O2/c15-14(16)17-6-2-3-10(8-17)7-11-4-1-5-12-13(11)19-9-18-12/h1,4-5,10H,2-3,6-9H2,(H3,15,16)/t10-/m1/s1 | ||
Molecular Formula: C14H19N3O2 | Mol. Weight: 261.31955 | Heavy Atoms: 19 |
Charge: 0 | Is Chiral: True | logP: 2.3012 |
HBD: 2 | HBA: 5 | TPSA: 71.57 |
#Bonds: 22 | #Rotatable Bonds: 3 | Shape Complexity: 0.5 |
Stereocomplexity: 0.071428575 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 3900 nM |