PDB Entry (5u5t)

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Visualizer: MichelaNGLo

PDB ID: 5u5t Resolution: 1.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27992714 DOI: 10.1021/acs.jmedchem.6b01473
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 1034.56 Depth: 26.3225
Hydrophobicity: 0.692308 Drug Score: 0.527293
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R)-3-[(2H-1,3-benzodioxol-4-yl)methyl]piperidine-1-carboximidamide
HET ID:   7W7 PubChem:   123132938
DrugBank:   - ChEMBL:   -
Canonical SMILES:   NC(=N)N1CCC[C@@H](C1)Cc1cccc2c1OCO2
Standard InChI:   InChI=1S/C14H19N3O2/c15-14(16)17-6-2-3-10(8-17)7-11-4-1-5-12-13(11)19-9-18-12/h1,4-5,10H,2-3,6-9H2,(H3,15,16)/t10-/m1/s1
Molecular Formula:   C14H19N3O2 Mol. Weight:   261.31955 Heavy Atoms:   19
Charge:   0 Is Chiral:   True logP:   2.3012
HBD:   2 HBA:   5 TPSA:   71.57
#Bonds:   22 #Rotatable Bonds:   3 Shape Complexity:   0.5
Stereocomplexity:   0.071428575 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 3900 nM