PDB Entry (5u5k)

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Visualizer: MichelaNGLo

PDB ID: 5u5k Resolution: 2.33 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27992714 DOI: 10.1021/acs.jmedchem.6b01473
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 1600.32 Depth: 35.0063
Hydrophobicity: 0.669591 Drug Score: 0.902102
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R)-3-[(3-methoxyphenyl)methyl]piperidine
HET ID:   7VY PubChem:   40427923
DrugBank:   - ChEMBL:   -
Canonical SMILES:   COc1cccc(c1)C[C@H]1CCCNC1
Standard InChI:   InChI=1S/C13H19NO/c1-15-13-6-2-4-11(9-13)8-12-5-3-7-14-10-12/h2,4,6,9,12,14H,3,5,7-8,10H2,1H3/t12-/m1/s1
Molecular Formula:   C13H19NO Mol. Weight:   205.29607 Heavy Atoms:   15
Charge:   0 Is Chiral:   True logP:   2.5661
HBD:   1 HBA:   2 TPSA:   21.26
#Bonds:   17 #Rotatable Bonds:   3 Shape Complexity:   0.53846157
Stereocomplexity:   0.07692308 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 95000 nM