PDB Entry (5u5k) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 5u5k | Resolution: 2.33 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27992714 | DOI: 10.1021/acs.jmedchem.6b01473 | |
Protein |
|
Protein Name: Polycomb protein EED | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75530 (EED_HUMAN) | Organism: Homo sapiens |
Gene Symbol: EED | Gene ID: 8726 |
Pocket Descriptors | |
Volume: 1600.32 | Depth: 35.0063 |
Hydrophobicity: 0.669591 | Drug Score: 0.902102 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: (3R)-3-[(3-methoxyphenyl)methyl]piperidine | ||
HET ID: 7VY | PubChem: 40427923 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: COc1cccc(c1)C[C@H]1CCCNC1 | ||
Standard InChI: InChI=1S/C13H19NO/c1-15-13-6-2-4-11(9-13)8-12-5-3-7-14-10-12/h2,4,6,9,12,14H,3,5,7-8,10H2,1H3/t12-/m1/s1 | ||
Molecular Formula: C13H19NO | Mol. Weight: 205.29607 | Heavy Atoms: 15 |
Charge: 0 | Is Chiral: True | logP: 2.5661 |
HBD: 1 | HBA: 2 | TPSA: 21.26 |
#Bonds: 17 | #Rotatable Bonds: 3 | Shape Complexity: 0.53846157 |
Stereocomplexity: 0.07692308 | Ligand Type: Small Molecule |
Binding Affinity |
|
Database Name | Value |
Binding MOAD | IC50 : 95000 nM |