PDB Entry (5k0m)

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Visualizer: MichelaNGLo

PDB ID: 5k0m Resolution: 1.83 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28135237 DOI: 10.1038/nchembio.2306
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 1528.26 Depth: 35.4469
Hydrophobicity: 0.667665 Drug Score: 0.875439
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R,4S)-1-[(1S)-7-fluoro-2,3-dihydro-1H-inden-1-yl]-N,N-dimethyl-4-{4-[4-(methylsulfonyl)piperazin-1-yl]phenyl}pyrrolidin-3-amine
HET ID:   6PU PubChem:   124037107
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CN([C@H]1CN(C[C@@H]1c1ccc(cc1)N1CCN(CC1)S(=O)(=O)C)[C@H]1CCc2c1c(F)ccc2)C
Standard InChI:   InChI=1S/C26H35FN4O2S/c1-28(2)25-18-30(24-12-9-20-5-4-6-23(27)26(20)24)17-22(25)19-7-10-21(11-8-19)29-13-15-31(16-14-29)34(3,32)33/h4-8,10-11,22,24-25H,9,12-18H2,1-3H3/t22-,24+,25+/m1/s1
Molecular Formula:   C26H35FN4O2S Mol. Weight:   486.6451 Heavy Atoms:   34
Charge:   0 Is Chiral:   True logP:   3.9458
HBD:   0 HBA:   6 TPSA:   55.48
#Bonds:   41 #Rotatable Bonds:   5 Shape Complexity:   0.53846157
Stereocomplexity:   0.15384616 Ligand Type:   Small Molecule
Binding Affinity
-