PDB Entry (3rjw)

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PDB ID: 3rjw Resolution: 2.56 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21743462 DOI: 10.1038/nchembio.599
Protein
Protein Name: Histone-lysine N-methyltransferase EHMT2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q96KQ7 (EHMT2_HUMAN) Organism: Homo sapiens
Gene Symbol: EHMT2 Gene ID: 10919
Pocket Descriptors
Volume: 661.056 Depth: 24.0905
Hydrophobicity: 0.718391 Drug Score: 0.29311
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-cyclohexyl-6-methoxy-N-[1-(1-methylethyl)piperidin-4-yl]-7-(3-pyrrolidin-1-ylpropoxy)quinazolin-4-amine
HET ID:   CIQ PubChem:   46224516
DrugBank:   - ChEMBL:   CHEMBL1231795
Canonical SMILES:   COc1cc2c(NC3CCN(CC3)C(C)C)nc(nc2cc1OCCCN1CCCC1)C1CCCCC1
Standard InChI:   InChI=1S/C30H47N5O2/c1-22(2)35-17-12-24(13-18-35)31-30-25-20-27(36-3)28(37-19-9-16-34-14-7-8-15-34)21-26(25)32-29(33-30)23-10-5-4-6-11-23/h20-24H,4-19H2,1-3H3,(H,31,32,33)
Molecular Formula:   C30H47N5O2 Mol. Weight:   509.72647 Heavy Atoms:   37
Charge:   0 Is Chiral:   False logP:   5.7843
HBD:   1 HBA:   7 TPSA:   62.75
#Bonds:   41 #Rotatable Bonds:   10 Shape Complexity:   0.73333335
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 27 nM
BindingDB Ki : 3.700000047683716 nM, Ki : 81 nM, Ki : 120 nM, Ki : 2.5 nM, Ki : 610 nM, Ki : 12 nM, IC50 : 48 nM, IC50 : 210 nM, IC50 : 15 nM, IC50 : 55 nM, IC50 : 59 nM, IC50 : 240 nM, IC50 : 70 nM