PDB Entry (4rg2)

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Visualizer: MichelaNGLo

PDB ID: 4rg2 Resolution: 1.5 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25590533 DOI: 10.1021/cb500956g
Protein
Protein Name: TP53-binding protein 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q12888 (TP53B_HUMAN) Organism: Homo sapiens
Gene Symbol: TP53BP1 Gene ID: 7158
Pocket Descriptors
Volume: 535.808 Depth: 12.9058
Hydrophobicity: 0.780822 Drug Score: 0.796956
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-bromo-N-[3-(tert-butylamino)propyl]benzamide
HET ID:   3OO PubChem:   78673861
DrugBank:   - ChEMBL:   CHEMBL4172977
Canonical SMILES:   Brc1cccc(c1)C(=O)NCCCNC(C)(C)C
Standard InChI:   InChI=1S/C14H21BrN2O/c1-14(2,3)17-9-5-8-16-13(18)11-6-4-7-12(15)10-11/h4,6-7,10,17H,5,8-9H2,1-3H3,(H,16,18)
Molecular Formula:   C14H21BrN2O Mol. Weight:   313.23334 Heavy Atoms:   18
Charge:   0 Is Chiral:   False logP:   3.7389
HBD:   2 HBA:   3 TPSA:   41.13
#Bonds:   18 #Rotatable Bonds:   7 Shape Complexity:   0.5
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Kd : 22000 nM, Kd : 29000 nM, Kd : 30000 nM