PDB Entry (2w2i) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2w2i | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21914792 | DOI: 10.1074/jbc.M111.283689 | |
Protein |
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Protein Name: Lysine-specific demethylase 4E | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: B2RXH2 (KDM4E_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4E | Gene ID: 390245 |
Pocket Descriptors | |
Volume: 285.952 | Depth: 28.9306 |
Hydrophobicity: 0.660377 | Drug Score: 0.0167301 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: PYRIDINE-2,4-DICARBOXYLIC ACID | ||
HET ID: PD2 | PubChem: 10365 | |
DrugBank: - | ChEMBL: CHEMBL316034 | |
Canonical SMILES: OC(=O)c1ccnc(c1)C(=O)O | ||
Standard InChI: InChI=1S/C7H5NO4/c9-6(10)4-1-2-8-5(3-4)7(11)12/h1-3H,(H,9,10)(H,11,12) | ||
Molecular Formula: C7H5NO4 | Mol. Weight: 167.1189 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: False | logP: 0.478 |
HBD: 2 | HBA: 5 | TPSA: 87.49 |
#Bonds: 12 | #Rotatable Bonds: 2 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 914 nM |
BindingDB | Ki : 914000 nM, IC50 : 1400 nM, IC50 : 6310 nM |