PDB Entry (2w2i)

Download

Visualizer: MichelaNGLo

PDB ID: 2w2i Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21914792 DOI: 10.1074/jbc.M111.283689
Protein
Protein Name: Lysine-specific demethylase 4E
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: B2RXH2 (KDM4E_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4E Gene ID: 390245
Pocket Descriptors
Volume: 285.952 Depth: 28.9306
Hydrophobicity: 0.660377 Drug Score: 0.0167301
Pocket Similarity: Calculate
Ligand
Ligand Name:   PYRIDINE-2,4-DICARBOXYLIC ACID
HET ID:   PD2 PubChem:   10365
DrugBank:   - ChEMBL:   CHEMBL316034
Canonical SMILES:   OC(=O)c1ccnc(c1)C(=O)O
Standard InChI:   InChI=1S/C7H5NO4/c9-6(10)4-1-2-8-5(3-4)7(11)12/h1-3H,(H,9,10)(H,11,12)
Molecular Formula:   C7H5NO4 Mol. Weight:   167.1189 Heavy Atoms:   12
Charge:   0 Is Chiral:   False logP:   0.478
HBD:   2 HBA:   5 TPSA:   87.49
#Bonds:   12 #Rotatable Bonds:   2 Shape Complexity:   0.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 914 nM
BindingDB Ki : 914000 nM, IC50 : 1400 nM, IC50 : 6310 nM