PDB Entry (4hon)

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Visualizer: MichelaNGLo

PDB ID: 4hon Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23219879 DOI: 10.1016/j.str.2012.10.018
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 183.232 Depth: 14.1173
Hydrophobicity: 0.682692 Drug Score: 0.0503966
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-OXOGLUTARIC ACID
HET ID:   AKG PubChem:   51
DrugBank:   DB02926 ChEMBL:   CHEMBL1686
Canonical SMILES:   OC(=O)CCC(=O)C(=O)O
Standard InChI:   InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)
Molecular Formula:   C5H6O5 Mol. Weight:   146.09814 Heavy Atoms:   10
Charge:   0 Is Chiral:   False logP:   -0.4951
HBD:   2 HBA:   5 TPSA:   91.67
#Bonds:   9 #Rotatable Bonds:   4 Shape Complexity:   0.4
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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