PDB Entry (4hon) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4hon | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23219879 | DOI: 10.1016/j.str.2012.10.018 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 183.232 | Depth: 14.1173 |
Hydrophobicity: 0.682692 | Drug Score: 0.0503966 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2-OXOGLUTARIC ACID | ||
HET ID: AKG | PubChem: 51 | |
DrugBank: DB02926 | ChEMBL: CHEMBL1686 | |
Canonical SMILES: OC(=O)CCC(=O)C(=O)O | ||
Standard InChI: InChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10) | ||
Molecular Formula: C5H6O5 | Mol. Weight: 146.09814 | Heavy Atoms: 10 |
Charge: 0 | Is Chiral: False | logP: -0.4951 |
HBD: 2 | HBA: 5 | TPSA: 91.67 |
#Bonds: 9 | #Rotatable Bonds: 4 | Shape Complexity: 0.4 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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