PDB Entry (5nap)

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Visualizer: MichelaNGLo

PDB ID: 5nap Resolution: 2.17 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29651884 DOI: 10.1080/14756366.2018.1458030
Protein
Protein Name: Acetylcholinesterase
Protein Class: HYDROLASE
Uniprot ID/ACC: P04058 (ACES_TETCF) Organism: Tetronarce californica
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 751.168 Depth: 20.0812
Hydrophobicity: 0.761628 Drug Score: 0.877317
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2~{E})-5,6-dimethoxy-2-[[1-(phenylmethyl)piperidin-4-yl]methylidene]-3~{H}-inden-1-one
HET ID:   DZ7 PubChem:   10762160
DrugBank:   - ChEMBL:   CHEMBL168938
Canonical SMILES:   COc1cc2c(cc1OC)C/C(=CC1CCN(CC1)Cc1ccccc1)/C2=O
Standard InChI:   InChI=1S/C24H27NO3/c1-27-22-14-19-13-20(24(26)21(19)15-23(22)28-2)12-17-8-10-25(11-9-17)16-18-6-4-3-5-7-18/h3-7,12,14-15,17H,8-11,13,16H2,1-2H3/b20-12+
Molecular Formula:   C24H27NO3 Mol. Weight:   377.47607 Heavy Atoms:   28
Charge:   0 Is Chiral:   False logP:   4.2191
HBD:   0 HBA:   4 TPSA:   38.77
#Bonds:   31 #Rotatable Bonds:   5 Shape Complexity:   0.375
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 11.119999885559082 nM