PDB Entry (4d6q) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4d6q | Resolution: 1.29 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 873.088 | Depth: 21.766 |
Hydrophobicity: 0.685083 | Drug Score: 0.606116 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: PYRIDINE-2,4-DICARBOXYLIC ACID | ||
HET ID: PD2 | PubChem: 10365 | |
DrugBank: - | ChEMBL: CHEMBL316034 | |
Canonical SMILES: OC(=O)c1ccnc(c1)C(=O)O | ||
Standard InChI: InChI=1S/C7H5NO4/c9-6(10)4-1-2-8-5(3-4)7(11)12/h1-3H,(H,9,10)(H,11,12) | ||
Molecular Formula: C7H5NO4 | Mol. Weight: 167.1189 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: False | logP: 0.478 |
HBD: 2 | HBA: 5 | TPSA: 87.49 |
#Bonds: 12 | #Rotatable Bonds: 2 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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