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Ligand Download |
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| Ligand Name: SPERMIDINE | ||
| HET ID: SPD | PubChem: 1102 | |
| DrugBank: DB03566 | ChEMBL: CHEMBL19612 | |
| Canonical SMILES: NCCCNCCCCN | ||
| Standard InChI: InChI=1S/C7H19N3/c8-4-1-2-6-10-7-3-5-9/h10H,1-9H2 | ||
| Molecular Formula: C7H19N3 | Mol. Weight: 145.24586 | Heavy Atoms: 10 |
| Charge: 0 | Is Chiral: False | logP: 1.4552 |
| HBD: 3 | HBA: 3 | TPSA: 64.07 |
| #Bonds: 9 | #Rotatable Bonds: 7 | Shape Complexity: 1.0 |
| Stereocomplexity: 0.0 | ||
Bound Proteins |
Protein Name | Uniprot ID/ACC | Organism | PDB ID | Binding Affinity | Binding Database | Complex Card |
| Spermidine/putrescine-binding periplasmic protein | P0AFK9 (POTD_ECOLI) | Escherichia coli | 1POT | Kd : 3200.0 nM, Kd : 3200.0 nM | Binding MOAD | SHOW |
| Spermidine-binding periplasmic protein SpuE | Q9I6J0 (SPUE_PSEAE) | Pseudomonas aeruginosa | 3TTN | Kd : 14.3 nM | PDBBind | SHOW |
| Spermidine-binding periplasmic protein SpuE | Q9I6J0 (SPUE_PSEAE) | Pseudomonas aeruginosa | 3TTN | Kd : 14.3 nM | Binding MOAD | SHOW |
| Putrescine-binding periplasmic protein | P31133 (POTF_ECOLI) | Escherichia coli | 4JDF | Kd : 6400000.0 nM | PDBBind | SHOW |
| Putrescine-binding periplasmic protein | P31133 (POTF_ECOLI) | Escherichia coli | 4JDF | Kd : 6400000.0 nM | Binding MOAD | SHOW |
| Spermidine/putrescine-binding periplasmic protein | P0AFK9 (POTD_ECOLI) | Escherichia coli | 1POY | Kd : 3200.0 nM | Binding MOAD | SHOW |