PDB Entry (3wmc)

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Visualizer: MichelaNGLo

PDB ID: 3wmc Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25155420 DOI: 10.1038/srep06188
Protein
Protein Name: Beta-hexosaminidase
Protein Class: HYDROLASE
Uniprot ID/ACC: Q06GJ0 (Q06GJ0_OSTFU) Organism: Ostrinia furnacalis
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 564.928 Depth: 19.9729
Hydrophobicity: 0.69863 Drug Score: 0.242686
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-(dimethylamino)-2-(2-{[(5-methyl-1,3,4-thiadiazol-2-yl)methyl]amino}ethyl)-1H-benzo[de]isoquinoline-1,3(2H)-dione
HET ID:   NF6 PubChem:   86223064
DrugBank:   - ChEMBL:   -
Canonical SMILES:   Cc1nnc(s1)CNCCn1c(=O)c2cccc3c2c(c1=O)ccc3N(C)C
Standard InChI:   InChI=1S/C20H21N5O2S/c1-12-22-23-17(28-12)11-21-9-10-25-19(26)14-6-4-5-13-16(24(2)3)8-7-15(18(13)14)20(25)27/h4-8,21H,9-11H2,1-3H3
Molecular Formula:   C20H21N5O2S Mol. Weight:   395.47803 Heavy Atoms:   28
Charge:   0 Is Chiral:   False logP:   2.3593
HBD:   1 HBA:   8 TPSA:   108.36
#Bonds:   31 #Rotatable Bonds:   6 Shape Complexity:   0.3
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 310 nM, Ki : 310 nM