PDB Entry (3wmc) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3wmc | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25155420 | DOI: 10.1038/srep06188 | |
Protein |
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Protein Name: Beta-hexosaminidase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q06GJ0 (Q06GJ0_OSTFU) | Organism: Ostrinia furnacalis |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 564.928 | Depth: 19.9729 |
Hydrophobicity: 0.69863 | Drug Score: 0.242686 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-(dimethylamino)-2-(2-{[(5-methyl-1,3,4-thiadiazol-2-yl)methyl]amino}ethyl)-1H-benzo[de]isoquinoline-1,3(2H)-dione | ||
HET ID: NF6 | PubChem: 86223064 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: Cc1nnc(s1)CNCCn1c(=O)c2cccc3c2c(c1=O)ccc3N(C)C | ||
Standard InChI: InChI=1S/C20H21N5O2S/c1-12-22-23-17(28-12)11-21-9-10-25-19(26)14-6-4-5-13-16(24(2)3)8-7-15(18(13)14)20(25)27/h4-8,21H,9-11H2,1-3H3 | ||
Molecular Formula: C20H21N5O2S | Mol. Weight: 395.47803 | Heavy Atoms: 28 |
Charge: 0 | Is Chiral: False | logP: 2.3593 |
HBD: 1 | HBA: 8 | TPSA: 108.36 |
#Bonds: 31 | #Rotatable Bonds: 6 | Shape Complexity: 0.3 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Ki : 310 nM, Ki : 310 nM |