PDB Entry (1nc4)

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PDB ID: 1nc4 Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 14653738 DOI: 10.1021/ja037236y
Protein
Protein Name: Monoclonal Antibody 2D12.5 Fab
Protein Class: ANTIBODY
Uniprot ID/ACC: - Organism: Mus musculus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 117.568 Depth: 10.8614
Hydrophobicity: 0.724638 Drug Score: 0.122349
Pocket Similarity: Calculate
Ligand
Ligand Name:   (S)-2-(4-NITROBENZYL)-1,4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE
HET ID:   DOF PubChem:   447331
DrugBank:   - ChEMBL:   CHEMBL1232308
Canonical SMILES:   OC(=O)CN1CCN(CCN(CCN([C@H](C1)Cc1ccc(cc1)[N+](=O)[O-])CC(=O)O)CC(=O)O)CC(=O)O
Standard InChI:   InChI=1S/C23H33N5O10/c29-20(30)13-24-5-6-25(14-21(31)32)9-10-27(16-23(35)36)19(12-26(8-7-24)15-22(33)34)11-17-1-3-18(4-2-17)28(37)38/h1-4,19H,5-16H2,(H,29,30)(H,31,32)(H,33,34)(H,35,36)/t19-/m0/s1
Molecular Formula:   C23H33N5O10 Mol. Weight:   539.53564 Heavy Atoms:   38
Charge:   0 Is Chiral:   True logP:   -0.6593
HBD:   4 HBA:   12 TPSA:   207.98
#Bonds:   40 #Rotatable Bonds:   11 Shape Complexity:   0.5652174
Stereocomplexity:   0.04347826 Ligand Type:   Small Molecule
Binding Affinity
-