PDB Entry (1nc4) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1nc4 | Resolution: 2.25 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 14653738 | DOI: 10.1021/ja037236y | |
Protein |
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Protein Name: Monoclonal Antibody 2D12.5 Fab | |
Protein Class: ANTIBODY | |
Uniprot ID/ACC: - | Organism: Mus musculus |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 117.568 | Depth: 10.8614 |
Hydrophobicity: 0.724638 | Drug Score: 0.122349 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (S)-2-(4-NITROBENZYL)-1,4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE | ||
HET ID: DOF | PubChem: 447331 | |
DrugBank: - | ChEMBL: CHEMBL1232308 | |
Canonical SMILES: OC(=O)CN1CCN(CCN(CCN([C@H](C1)Cc1ccc(cc1)[N+](=O)[O-])CC(=O)O)CC(=O)O)CC(=O)O | ||
Standard InChI: InChI=1S/C23H33N5O10/c29-20(30)13-24-5-6-25(14-21(31)32)9-10-27(16-23(35)36)19(12-26(8-7-24)15-22(33)34)11-17-1-3-18(4-2-17)28(37)38/h1-4,19H,5-16H2,(H,29,30)(H,31,32)(H,33,34)(H,35,36)/t19-/m0/s1 | ||
Molecular Formula: C23H33N5O10 | Mol. Weight: 539.53564 | Heavy Atoms: 38 |
Charge: 0 | Is Chiral: True | logP: -0.6593 |
HBD: 4 | HBA: 12 | TPSA: 207.98 |
#Bonds: 40 | #Rotatable Bonds: 11 | Shape Complexity: 0.5652174 |
Stereocomplexity: 0.04347826 | Ligand Type: Small Molecule |
Binding Affinity |
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