PDB Entry (1nc2)

Download

Visualizer: MichelaNGLo

PDB ID: 1nc2 Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 14653738 DOI: 10.1021/ja037236y
Protein
Protein Name: Monoclonal Antibody 2D12.5 Fab
Protein Class: ANTIBODY
Uniprot ID/ACC: - Organism: Mus musculus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 135.488 Depth: 17.8016
Hydrophobicity: 0.72093 Drug Score: 0.0920206
Pocket Similarity: Calculate
Ligand
Ligand Name:   (S)-2-(4-(2-(2-HYDROXYETHYLTHIO)-ACETAMIDO)-BENZYL)-1,4,7,10-TETRAAZACYCLODODECANE-N,N',N'',N'''-TETRAACETATE
HET ID:   DOE PubChem:   447330
DrugBank:   - ChEMBL:   CHEMBL1232307
Canonical SMILES:   OCCSCC(=O)Nc1ccc(cc1)C[C@H]1CN(CCN(CCN(CCN1CC(=O)O)CC(=O)O)CC(=O)O)CC(=O)O
Standard InChI:   InChI=1S/C27H41N5O10S/c33-11-12-43-19-23(34)28-21-3-1-20(2-4-21)13-22-14-31(17-26(39)40)8-7-29(15-24(35)36)5-6-30(16-25(37)38)9-10-32(22)18-27(41)42/h1-4,22,33H,5-19H2,(H,28,34)(H,35,36)(H,37,38)(H,39,40)(H,41,42)/t22-/m0/s1
Molecular Formula:   C27H41N5O10S Mol. Weight:   627.707 Heavy Atoms:   43
Charge:   0 Is Chiral:   True logP:   -1.3537
HBD:   6 HBA:   16 TPSA:   236.79
#Bonds:   45 #Rotatable Bonds:   16 Shape Complexity:   0.5925926
Stereocomplexity:   0.037037037 Ligand Type:   Small Molecule
Binding Affinity
-