PDB Entry (3kv2)

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Visualizer: MichelaNGLo

PDB ID: 3kv2 Resolution: 1.55 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20153713 DOI: 10.1016/j.abb.2010.02.004
Protein
Protein Name: Arginase-1
Protein Class: HYDROLASE
Uniprot ID/ACC: P05089 (ARGI1_HUMAN) Organism: Homo sapiens
Gene Symbol: ARG1 Gene ID: 383
Pocket Descriptors
Volume: 221.12 Depth: 16.6139
Hydrophobicity: 0.581967 Drug Score: 0.478484
Pocket Similarity: Calculate
Ligand
Ligand Name:   NOR-N-OMEGA-HYDROXY-L-ARGININE
HET ID:   NNH PubChem:   26248652, 446124
DrugBank:   DB02381 ChEMBL:   CHEMBL1234777
Canonical SMILES:   ONC(=N)NCC[C@@H](C(=O)O)N
Standard InChI:   InChI=1S/C5H12N4O3/c6-3(4(10)11)1-2-8-5(7)9-12/h3,12H,1-2,6H2,(H,10,11)(H3,7,8,9)/t3-/m0/s1
Molecular Formula:   C5H12N4O3 Mol. Weight:   176.17378 Heavy Atoms:   12
Charge:   0 Is Chiral:   True logP:   -0.1266
HBD:   6 HBA:   7 TPSA:   131.46
#Bonds:   12 #Rotatable Bonds:   6 Shape Complexity:   0.6
Stereocomplexity:   0.2 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 47.5099983215332 nM
BindingDB Kd : 47 nM, Kd : 2000 nM
Binding MOAD Kd : 47.5099983215332 nM