PDB Entry (2y7i) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2y7i | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 21560168 | DOI: 10.1002/prot.23060 | |
Protein |
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Protein Name: Putative arginine-binding periplasmic protein | |
Protein Class: TRANSPORTER | |
Uniprot ID/ACC: Q8ZKA9 (Q8ZKA9_SALTY) | Organism: Salmonella typhimurium |
Gene Symbol: - | Gene ID: 1255877 |
Pocket Descriptors | |
Volume: 753.088 | Depth: 31.5649 |
Hydrophobicity: 0.683019 | Drug Score: 0.355356 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: ARGININE | ||
HET ID: ARG | PubChem: 1549073, 5287702, 52941769, 88031296, 59294017, 59904234 | |
DrugBank: DB04027 | ChEMBL: CHEMBL305959 | |
Canonical SMILES: OC(=O)[C@H](CCCNC(=[NH2+])N)N | ||
Standard InChI: InChI=1S/C6H14N4O2/c7-4(5(11)12)2-1-3-10-6(8)9/h4H,1-3,7H2,(H,11,12)(H4,8,9,10)/p+1/t4-/m0/s1 | ||
Molecular Formula: C6H15N4O2+ | Mol. Weight: 175.2089 | Heavy Atoms: 12 |
Charge: 1 | Is Chiral: True | logP: -1.3666 |
HBD: 5 | HBA: 5 | TPSA: 126.96 |
#Bonds: 14 | #Rotatable Bonds: 6 | Shape Complexity: 0.6666667 |
Stereocomplexity: 0.16666667 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 2900 nM, Kd : 2900 nM |