PDB Entry (5acm) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5acm | Resolution: 1.05 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26576950 | DOI: 10.7554/eLife.10935 | |
Protein |
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Protein Name: Immunoglobulin lambda variable 2-8 | |
Protein Class: ANTIBODY | |
Uniprot ID/ACC: P01709 (LV208_HUMAN) | Organism: Homo sapiens |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 323.84 | Depth: 16.3365 |
Hydrophobicity: 0.819672 | Drug Score: 0.922097 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM | ||
HET ID: MBT | PubChem: 4139 | |
DrugBank: DB08167 | ChEMBL: CHEMBL191083 | |
Canonical SMILES: CN(c1ccc2c(c1)[s+]c1c(n2)ccc(c1)N(C)C)C | ||
Standard InChI: InChI=1S/C16H18N3S/c1-18(2)11-5-7-13-15(9-11)20-16-10-12(19(3)4)6-8-14(16)17-13/h5-10H,1-4H3/q+1 | ||
Molecular Formula: C16H18N3S+ | Mol. Weight: 284.39923 | Heavy Atoms: 20 |
Charge: 1 | Is Chiral: False | logP: 3.8626 |
HBD: 0 | HBA: 4 | TPSA: 47.61 |
#Bonds: 22 | #Rotatable Bonds: 2 | Shape Complexity: 0.25 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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