PDB Entry (5ftg)

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Visualizer: MichelaNGLo

PDB ID: 5ftg Resolution: 1.45 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27029499 DOI: 10.1038/srep23793
Protein
Protein Name: Choline kinase alpha
Protein Class: TRANSFERASE
Uniprot ID/ACC: P35790 (CHKA_HUMAN) Organism: Homo sapiens
Gene Symbol: CHKA Gene ID: 1119
Pocket Descriptors
Volume: 474.88 Depth: 17.9287
Hydrophobicity: 0.77381 Drug Score: 0.639758
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-[[4-[2-[4-[[4-(dimethylamino)pyridin-1-yl]methyl]phenoxy]ethoxy]phenyl]methyl]-N,N-dimethyl-pyridin-4-amine
HET ID:   NBR PubChem:   90467111
DrugBank:   - ChEMBL:   CHEMBL4302556
Canonical SMILES:   CN(c1cc[n+](cc1)Cc1ccc(cc1)OCCOc1ccc(cc1)C[n+]1ccc(cc1)N(C)C)C
Standard InChI:   InChI=1S/C30H36N4O2/c1-31(2)27-13-17-33(18-14-27)23-25-5-9-29(10-6-25)35-21-22-36-30-11-7-26(8-12-30)24-34-19-15-28(16-20-34)32(3)4/h5-20H,21-24H2,1-4H3/q+2
Molecular Formula:   C30H36N4O2++ Mol. Weight:   484.63245 Heavy Atoms:   36
Charge:   2 Is Chiral:   False logP:   3.948
HBD:   0 HBA:   4 TPSA:   32.7
#Bonds:   39 #Rotatable Bonds:   11 Shape Complexity:   0.26666668
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 700 nM