PDB Entry (6pzu) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6pzu | Resolution: 1.74 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31793776 | DOI: 10.1021/acs.jmedchem.9b01540 | |
Protein |
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Protein Name: Histone deacetylase 6 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: F8W4B7 (F8W4B7_DANRE) | Organism: Danio rerio |
Gene Symbol: hdac6 | Gene ID: 565482 |
Pocket Descriptors | |
Volume: 99.136 | Depth: 12.0124 |
Hydrophobicity: 0.75 | Drug Score: 0.426968 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-[(benzyloxy)carbonyl]-L-leucyl-N-{[4-(hydroxycarbamoyl)phenyl]methyl}-L-alaninamide | ||
HET ID: A6I | PubChem: 145865297 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: ONC(=O)c1ccc(cc1)CNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)CC(C)C)C | ||
Standard InChI: InChI=1S/C25H32N4O6/c1-16(2)13-21(28-25(33)35-15-19-7-5-4-6-8-19)24(32)27-17(3)22(30)26-14-18-9-11-20(12-10-18)23(31)29-34/h4-12,16-17,21,34H,13-15H2,1-3H3,(H,26,30)(H,27,32)(H,28,33)(H,29,31)/t17-,21-/m0/s1 | ||
Molecular Formula: C25H32N4O6 | Mol. Weight: 484.54477 | Heavy Atoms: 35 |
Charge: 0 | Is Chiral: True | logP: 3.8312 |
HBD: 5 | HBA: 10 | TPSA: 145.86 |
#Bonds: 38 | #Rotatable Bonds: 16 | Shape Complexity: 0.36 |
Stereocomplexity: 0.08 | Ligand Type: Small Molecule |
Binding Affinity |
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