PDB Entry (6pzu)

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Visualizer: MichelaNGLo

PDB ID: 6pzu Resolution: 1.74 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31793776 DOI: 10.1021/acs.jmedchem.9b01540
Protein
Protein Name: Histone deacetylase 6
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: F8W4B7 (F8W4B7_DANRE) Organism: Danio rerio
Gene Symbol: hdac6 Gene ID: 565482
Pocket Descriptors
Volume: 99.136 Depth: 12.0124
Hydrophobicity: 0.75 Drug Score: 0.426968
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[(benzyloxy)carbonyl]-L-leucyl-N-{[4-(hydroxycarbamoyl)phenyl]methyl}-L-alaninamide
HET ID:   A6I PubChem:   145865297
DrugBank:   - ChEMBL:   -
Canonical SMILES:   ONC(=O)c1ccc(cc1)CNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)CC(C)C)C
Standard InChI:   InChI=1S/C25H32N4O6/c1-16(2)13-21(28-25(33)35-15-19-7-5-4-6-8-19)24(32)27-17(3)22(30)26-14-18-9-11-20(12-10-18)23(31)29-34/h4-12,16-17,21,34H,13-15H2,1-3H3,(H,26,30)(H,27,32)(H,28,33)(H,29,31)/t17-,21-/m0/s1
Molecular Formula:   C25H32N4O6 Mol. Weight:   484.54477 Heavy Atoms:   35
Charge:   0 Is Chiral:   True logP:   3.8312
HBD:   5 HBA:   10 TPSA:   145.86
#Bonds:   38 #Rotatable Bonds:   16 Shape Complexity:   0.36
Stereocomplexity:   0.08 Ligand Type:   Small Molecule
Binding Affinity
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