PDB Entry (1y5u) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1y5u | Resolution: 1.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 17191291 | DOI: 10.1002/cmdc.200600185 | |
Protein |
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Protein Name: Cationic trypsin | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00760 (TRY1_BOVIN) | Organism: Bos taurus |
Gene Symbol: - | Gene ID: 615026 |
Pocket Descriptors | |
Volume: 392.128 | Depth: 19.5018 |
Hydrophobicity: 0.671053 | Drug Score: 0.0674369 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2-O-{3-[AMINO(IMINO)METHYL]PHENYL}-5-O-{4-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL | ||
HET ID: TL4 | PubChem: 5326927 | |
DrugBank: DB04793 | ChEMBL: CHEMBL1236312 | |
Canonical SMILES: NC(=N)c1ccc(cc1)O[C@@H]1CO[C@H]2[C@@H]1OC[C@@H]2Oc1cccc(c1)C(=N)N | ||
Standard InChI: InChI=1S/C20H22N4O4/c21-19(22)11-4-6-13(7-5-11)27-15-9-25-18-16(10-26-17(15)18)28-14-3-1-2-12(8-14)20(23)24/h1-8,15-18H,9-10H2,(H3,21,22)(H3,23,24)/t15-,16+,17-,18-/m1/s1 | ||
Molecular Formula: C20H22N4O4 | Mol. Weight: 382.4131 | Heavy Atoms: 28 |
Charge: 0 | Is Chiral: True | logP: 2.8474 |
HBD: 4 | HBA: 8 | TPSA: 136.66 |
#Bonds: 35 | #Rotatable Bonds: 6 | Shape Complexity: 0.3 |
Stereocomplexity: 0.2 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 220 nM |