PDB Entry (1ceb) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1ceb | Resolution: 2.07 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 8611560 | DOI: 10.1021/bi9521351 | |
Protein |
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Protein Name: Plasminogen | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00747 (PLMN_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PLG | Gene ID: 5340 |
Pocket Descriptors | |
Volume: 236.672 | Depth: 8.54166 |
Hydrophobicity: 0.757576 | Drug Score: 0.639558 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID | ||
HET ID: AMH | PubChem: 5526 | |
DrugBank: DB00302 | ChEMBL: CHEMBL877 | |
Canonical SMILES: NC[C@@H]1CC[C@H](CC1)C(=O)O | ||
Standard InChI: InChI=1S/C8H15NO2/c9-5-6-1-3-7(4-2-6)8(10)11/h6-7H,1-5,9H2,(H,10,11)/t6-,7- | ||
Molecular Formula: C8H15NO2 | Mol. Weight: 157.2102 | Heavy Atoms: 11 |
Charge: 0 | Is Chiral: True | logP: 1.5364 |
HBD: 2 | HBA: 3 | TPSA: 63.32 |
#Bonds: 13 | #Rotatable Bonds: 2 | Shape Complexity: 0.875 |
Stereocomplexity: 0.25 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 1000 nM |
BindingDB | Kd : 2200 nM, Kd : 36000 nM, Kd : 36000 nM, Kd : 1100 nM, Kd : 750000 nM, Kd : 40000000 nM, Kd : 2000000 nM, Kd : 10000000 nM, Kd : 50000 nM, Kd : 3100 nM, Kd : 12000 nM, Kd : 11500 nM |
Binding MOAD | Ki : 1000 nM |