PDB Entry (1ceb)

Download

Visualizer: MichelaNGLo

PDB ID: 1ceb Resolution: 2.07 Å Exp. Method: X-RAY DIFFRACTION
PMID: 8611560 DOI: 10.1021/bi9521351
Protein
Protein Name: Plasminogen
Protein Class: HYDROLASE
Uniprot ID/ACC: P00747 (PLMN_HUMAN) Organism: Homo sapiens
Gene Symbol: PLG Gene ID: 5340
Pocket Descriptors
Volume: 236.672 Depth: 8.54166
Hydrophobicity: 0.757576 Drug Score: 0.639558
Pocket Similarity: Calculate
Ligand
Ligand Name:   TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID
HET ID:   AMH PubChem:   5526
DrugBank:   DB00302 ChEMBL:   CHEMBL877
Canonical SMILES:   NC[C@@H]1CC[C@H](CC1)C(=O)O
Standard InChI:   InChI=1S/C8H15NO2/c9-5-6-1-3-7(4-2-6)8(10)11/h6-7H,1-5,9H2,(H,10,11)/t6-,7-
Molecular Formula:   C8H15NO2 Mol. Weight:   157.2102 Heavy Atoms:   11
Charge:   0 Is Chiral:   True logP:   1.5364
HBD:   2 HBA:   3 TPSA:   63.32
#Bonds:   13 #Rotatable Bonds:   2 Shape Complexity:   0.875
Stereocomplexity:   0.25 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 1000 nM
BindingDB Kd : 2200 nM, Kd : 36000 nM, Kd : 36000 nM, Kd : 1100 nM, Kd : 750000 nM, Kd : 40000000 nM, Kd : 2000000 nM, Kd : 10000000 nM, Kd : 50000 nM, Kd : 3100 nM, Kd : 12000 nM, Kd : 11500 nM
Binding MOAD Ki : 1000 nM