PDB Entry (5x71) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5x71 | Resolution: 2.57 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Putative mRNA-capping enzyme P5 | |
Protein Class: VIRAL PROTEIN | |
Uniprot ID/ACC: P14583 (MCE_RDVA) | Organism: Rice dwarf virus |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 121.728 | Depth: 15.2535 |
Hydrophobicity: 0.704348 | Drug Score: 0.048311 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: GUANOSINE-5'-MONOPHOSPHATE | ||
HET ID: 5GP | PubChem: 135398631 | |
DrugBank: DB01972 | ChEMBL: CHEMBL283807 | |
Canonical SMILES: O[C@@H]1[C@H](O)[C@H](O[C@H]1n1cnc2c1nc(N)[nH]c2=O)COP(=O)(O)O | ||
Standard InChI: InChI=1S/C10H14N5O8P/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1 | ||
Molecular Formula: C10H14N5O8P | Mol. Weight: 363.2206 | Heavy Atoms: 24 |
Charge: 0 | Is Chiral: True | logP: -1.9885 |
HBD: 6 | HBA: 12 | TPSA: 215.85 |
#Bonds: 31 | #Rotatable Bonds: 4 | Shape Complexity: 0.5 |
Stereocomplexity: 0.4 | Ligand Type: Small Molecule |
Binding Affinity |
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