PDB Entry (5l8y) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 5l8y | Resolution: 2.14 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 29672041 | DOI: 10.1021/acs.jmedchem.7b01670 | |
Protein |
|
Protein Name: Phosphodiesterase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: Q8WQX9 (Q8WQX9_9TRYP) | Organism: Trypanosoma brucei |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 974.528 | Depth: 30.9843 |
Hydrophobicity: 0.652174 | Drug Score: 0.5 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 2-[(4-{5-[(4aR,8aS)-3-cycloheptyl-4-oxo-3,4,4a,5,8,8a-hexahydrophthalazin-1-yl]-2-methoxyphenyl}phenyl)formamido]-N-(2-hydroxyethyl)acetamide | ||
HET ID: CVA | PubChem: 137349131 | |
DrugBank: - | ChEMBL: CHEMBL4204966 | |
Canonical SMILES: OCCNC(=O)CNC(=O)c1ccc(cc1)c1cc(ccc1OC)C1=NN(C2CCCCCC2)C(=O)[C@H]2[C@@H]1CC=CC2 | ||
Standard InChI: InChI=1S/C33H40N4O5/c1-42-29-17-16-24(20-28(29)22-12-14-23(15-13-22)32(40)35-21-30(39)34-18-19-38)31-26-10-6-7-11-27(26)33(41)37(36-31)25-8-4-2-3-5-9-25/h6-7,12-17,20,25-27,38H,2-5,8-11,18-19,21H2,1H3,(H,34,39)(H,35,40)/t26-,27+/m0/s1 | ||
Molecular Formula: C33H40N4O5 | Mol. Weight: 572.6945 | Heavy Atoms: 42 |
Charge: 0 | Is Chiral: True | logP: 4.2073 |
HBD: 3 | HBA: 9 | TPSA: 120.33 |
#Bonds: 48 | #Rotatable Bonds: 11 | Shape Complexity: 0.45454547 |
Stereocomplexity: 0.060606062 | Ligand Type: Small Molecule |
Binding Affinity |
|
Database Name | Value |
Binding MOAD | Ki : 400 nM |