PDB Entry (5l8y)

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PDB ID: 5l8y Resolution: 2.14 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29672041 DOI: 10.1021/acs.jmedchem.7b01670
Protein
Protein Name: Phosphodiesterase
Protein Class: HYDROLASE
Uniprot ID/ACC: Q8WQX9 (Q8WQX9_9TRYP) Organism: Trypanosoma brucei
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 974.528 Depth: 30.9843
Hydrophobicity: 0.652174 Drug Score: 0.5
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[(4-{5-[(4aR,8aS)-3-cycloheptyl-4-oxo-3,4,4a,5,8,8a-hexahydrophthalazin-1-yl]-2-methoxyphenyl}phenyl)formamido]-N-(2-hydroxyethyl)acetamide
HET ID:   CVA PubChem:   137349131
DrugBank:   - ChEMBL:   CHEMBL4204966
Canonical SMILES:   OCCNC(=O)CNC(=O)c1ccc(cc1)c1cc(ccc1OC)C1=NN(C2CCCCCC2)C(=O)[C@H]2[C@@H]1CC=CC2
Standard InChI:   InChI=1S/C33H40N4O5/c1-42-29-17-16-24(20-28(29)22-12-14-23(15-13-22)32(40)35-21-30(39)34-18-19-38)31-26-10-6-7-11-27(26)33(41)37(36-31)25-8-4-2-3-5-9-25/h6-7,12-17,20,25-27,38H,2-5,8-11,18-19,21H2,1H3,(H,34,39)(H,35,40)/t26-,27+/m0/s1
Molecular Formula:   C33H40N4O5 Mol. Weight:   572.6945 Heavy Atoms:   42
Charge:   0 Is Chiral:   True logP:   4.2073
HBD:   3 HBA:   9 TPSA:   120.33
#Bonds:   48 #Rotatable Bonds:   11 Shape Complexity:   0.45454547
Stereocomplexity:   0.060606062 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 400 nM