PDB Entry (5ejw)

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Visualizer: MichelaNGLo

PDB ID: 5ejw Resolution: 2.6 Å Exp. Method: X-RAY DIFFRACTION
PMID: 27326334 DOI: 10.1021/acsmedchemlett.6b00042
Protein
Protein Name: Chromobox protein homolog 7
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q8VDS3 (CBX7_MOUSE) Organism: Mus musculus
Gene Symbol: Cbx7 Gene ID: 52609
Pocket Descriptors
Volume: 1002.56 Depth: 22.5424
Hydrophobicity: 0.716495 Drug Score: 0.731304
Pocket Similarity: Calculate
Ligand
Ligand Name:   (1~{R})-2-[2-azanylidene-3-[(2-methylphenyl)methyl]benzimidazol-1-yl]-1-(3,4-dichlorophenyl)ethanol
HET ID:   5PZ PubChem:   1364574
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O[C@H](c1ccc(c(c1)Cl)Cl)Cn1c(=N)n(c2c1cccc2)Cc1ccccc1C
Standard InChI:   InChI=1S/C23H21Cl2N3O/c1-15-6-2-3-7-17(15)13-27-20-8-4-5-9-21(20)28(23(27)26)14-22(29)16-10-11-18(24)19(25)12-16/h2-12,22,26,29H,13-14H2,1H3/t22-/m0/s1
Molecular Formula:   C23H21Cl2N3O Mol. Weight:   426.33835 Heavy Atoms:   29
Charge:   0 Is Chiral:   True logP:   5.4191
HBD:   2 HBA:   4 TPSA:   53.94
#Bonds:   33 #Rotatable Bonds:   5 Shape Complexity:   0.17391305
Stereocomplexity:   0.04347826 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Kd : 500000 nM, Kd : 23800 nM