PDB Entry (5ejw) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5ejw | Resolution: 2.6 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 27326334 | DOI: 10.1021/acsmedchemlett.6b00042 | |
Protein |
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Protein Name: Chromobox protein homolog 7 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q8VDS3 (CBX7_MOUSE) | Organism: Mus musculus |
Gene Symbol: Cbx7 | Gene ID: 52609 |
Pocket Descriptors | |
Volume: 1002.56 | Depth: 22.5424 |
Hydrophobicity: 0.716495 | Drug Score: 0.731304 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (1~{R})-2-[2-azanylidene-3-[(2-methylphenyl)methyl]benzimidazol-1-yl]-1-(3,4-dichlorophenyl)ethanol | ||
HET ID: 5PZ | PubChem: 1364574 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O[C@H](c1ccc(c(c1)Cl)Cl)Cn1c(=N)n(c2c1cccc2)Cc1ccccc1C | ||
Standard InChI: InChI=1S/C23H21Cl2N3O/c1-15-6-2-3-7-17(15)13-27-20-8-4-5-9-21(20)28(23(27)26)14-22(29)16-10-11-18(24)19(25)12-16/h2-12,22,26,29H,13-14H2,1H3/t22-/m0/s1 | ||
Molecular Formula: C23H21Cl2N3O | Mol. Weight: 426.33835 | Heavy Atoms: 29 |
Charge: 0 | Is Chiral: True | logP: 5.4191 |
HBD: 2 | HBA: 4 | TPSA: 53.94 |
#Bonds: 33 | #Rotatable Bonds: 5 | Shape Complexity: 0.17391305 |
Stereocomplexity: 0.04347826 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | Kd : 500000 nM, Kd : 23800 nM |