PDB Entry (4y86)

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Visualizer: MichelaNGLo

PDB ID: 4y86 Resolution: 2.01 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26316540 DOI: 10.1124/mol.115.099747
Protein
Protein Name: High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
Protein Class: HYDROLASE
Uniprot ID/ACC: O76083 (PDE9A_HUMAN) Organism: Homo sapiens
Gene Symbol: PDE9A Gene ID: 5152
Pocket Descriptors
Volume: 537.216 Depth: 24.883
Hydrophobicity: 0.680608 Drug Score: 0.0313642
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-{[(1S)-1-(4-chlorophenyl)ethyl]amino}-1-cyclopentyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one
HET ID:   49D PubChem:   135567003
DrugBank:   - ChEMBL:   -
Canonical SMILES:   Clc1ccc(cc1)[C@@H](Nc1[nH]c(=O)c2c(n1)n(nc2)C1CCCC1)C
Standard InChI:   InChI=1S/C18H20ClN5O/c1-11(12-6-8-13(19)9-7-12)21-18-22-16-15(17(25)23-18)10-20-24(16)14-4-2-3-5-14/h6-11,14H,2-5H2,1H3,(H2,21,22,23,25)/t11-/m0/s1
Molecular Formula:   C18H20ClN5O Mol. Weight:   357.8373 Heavy Atoms:   25
Charge:   0 Is Chiral:   True logP:   4.1342
HBD:   2 HBA:   5 TPSA:   75.6
#Bonds:   30 #Rotatable Bonds:   4 Shape Complexity:   0.3888889
Stereocomplexity:   0.055555556 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 11 nM