PDB Entry (4y86) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4y86 | Resolution: 2.01 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26316540 | DOI: 10.1124/mol.115.099747 | |
Protein |
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Protein Name: High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: O76083 (PDE9A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PDE9A | Gene ID: 5152 |
Pocket Descriptors | |
Volume: 537.216 | Depth: 24.883 |
Hydrophobicity: 0.680608 | Drug Score: 0.0313642 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-{[(1S)-1-(4-chlorophenyl)ethyl]amino}-1-cyclopentyl-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one | ||
HET ID: 49D | PubChem: 135567003 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: Clc1ccc(cc1)[C@@H](Nc1[nH]c(=O)c2c(n1)n(nc2)C1CCCC1)C | ||
Standard InChI: InChI=1S/C18H20ClN5O/c1-11(12-6-8-13(19)9-7-12)21-18-22-16-15(17(25)23-18)10-20-24(16)14-4-2-3-5-14/h6-11,14H,2-5H2,1H3,(H2,21,22,23,25)/t11-/m0/s1 | ||
Molecular Formula: C18H20ClN5O | Mol. Weight: 357.8373 | Heavy Atoms: 25 |
Charge: 0 | Is Chiral: True | logP: 4.1342 |
HBD: 2 | HBA: 5 | TPSA: 75.6 |
#Bonds: 30 | #Rotatable Bonds: 4 | Shape Complexity: 0.3888889 |
Stereocomplexity: 0.055555556 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 11 nM |