PDB Entry (4mm6)

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Visualizer: MichelaNGLo

PDB ID: 4mm6 Resolution: 3.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24121440 DOI: 10.1038/nature12648
Protein
Protein Name: Na(+):neurotransmitter symporter (Snf family)
Protein Class: TRANSPORTER
Uniprot ID/ACC: O67854 (O67854_AQUAE) Organism: Aquifex aeolicus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 987.968 Depth: 26.1381
Hydrophobicity: 0.718254 Drug Score: 0.488141
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3S)-N-methyl-3-(naphthalen-1-yloxy)-3-(thiophen-2-yl)propan-1-amine
HET ID:   29E PubChem:   60835
DrugBank:   DB00476 ChEMBL:   CHEMBL1175
Canonical SMILES:   CNCC[C@@H](c1cccs1)Oc1cccc2c1cccc2
Standard InChI:   InChI=1S/C18H19NOS/c1-19-12-11-17(18-10-5-13-21-18)20-16-9-4-7-14-6-2-3-8-15(14)16/h2-10,13,17,19H,11-12H2,1H3/t17-/m0/s1
Molecular Formula:   C18H19NOS Mol. Weight:   297.41455 Heavy Atoms:   21
Charge:   0 Is Chiral:   True logP:   5.0218
HBD:   1 HBA:   3 TPSA:   49.5
#Bonds:   24 #Rotatable Bonds:   6 Shape Complexity:   0.22222222
Stereocomplexity:   0.055555556 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 205 nM