PDB Entry (3zu0)

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Visualizer: MichelaNGLo

PDB ID: 3zu0 Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 21933152 DOI: 10.1042/BJ20111263
Protein
Protein Name: NAD 5'-nucleotidase
Protein Class: HYDROLASE
Uniprot ID/ACC: P44569 (5NTD_HAEIN) Organism: Haemophilus influenzae
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 404.544 Depth: 31.3778
Hydrophobicity: 0.643382 Drug Score: 0.0177828
Pocket Similarity: Calculate
Ligand
Ligand Name:   PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
HET ID:   A12 PubChem:   92199
DrugBank:   DB03148 ChEMBL:   CHEMBL583969
Canonical SMILES:   O[C@@H]1[C@@H](CO[P@](=O)(CP(=O)(O)O)O)O[C@H]([C@@H]1O)n1cnc2c1ncnc2N
Standard InChI:   InChI=1S/C11H17N5O9P2/c12-9-6-10(14-2-13-9)16(3-15-6)11-8(18)7(17)5(25-11)1-24-27(22,23)4-26(19,20)21/h2-3,5,7-8,11,17-18H,1,4H2,(H,22,23)(H2,12,13,14)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1
Molecular Formula:   C11H17N5O9P2 Mol. Weight:   425.2283 Heavy Atoms:   27
Charge:   0 Is Chiral:   True logP:   -1.0539
HBD:   6 HBA:   14 TPSA:   242.99
#Bonds:   33 #Rotatable Bonds:   6 Shape Complexity:   0.54545456
Stereocomplexity:   0.45454547 Ligand Type:   Small Molecule
Binding Affinity
-