PDB Entry (3wto)

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Visualizer: MichelaNGLo

PDB ID: 3wto Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25267717 DOI: 10.1124/mol.114.094698
Protein
Protein Name: Acetylcholine-binding protein
Protein Class: SIGNALING PROTEIN
Uniprot ID/ACC: P58154 (ACHP_LYMST) Organism: Lymnaea stagnalis
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 587.584 Depth: 26.0679
Hydrophobicity: 0.772152 Drug Score: 0.213061
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2Z)-1-[(6-chloropyridin-3-yl)methyl]imidazolidin-2-imine
HET ID:   N2Y PubChem:   10130527
DrugBank:   - ChEMBL:   CHEMBL309804
Canonical SMILES:   N=C1NCCN1Cc1ccc(nc1)Cl
Standard InChI:   InChI=1S/C9H11ClN4/c10-8-2-1-7(5-13-8)6-14-4-3-12-9(14)11/h1-2,5H,3-4,6H2,(H2,11,12)
Molecular Formula:   C9H11ClN4 Mol. Weight:   210.66344 Heavy Atoms:   14
Charge:   0 Is Chiral:   False logP:   1.4414
HBD:   2 HBA:   4 TPSA:   52.01
#Bonds:   15 #Rotatable Bonds:   2 Shape Complexity:   0.33333334
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 119 nM, Kd : 119 nM