PDB Entry (3nvy) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3nvy | Resolution: 2.0 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25060641 | DOI: 10.1021/np500320g | |
Protein |
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Protein Name: Xanthine dehydrogenase/oxidase | |
Protein Class: OXIDOREDUCTASE | |
Uniprot ID/ACC: P80457 (XDH_BOVIN) | Organism: Bos taurus |
Gene Symbol: XDH | Gene ID: 280960 |
Pocket Descriptors | |
Volume: 229.44 | Depth: 28.8151 |
Hydrophobicity: 0.661808 | Drug Score: 0.00815799 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3,5,7,3',4'-PENTAHYDROXYFLAVONE | ||
HET ID: QUE | PubChem: 5280343 | |
DrugBank: DB04216 | ChEMBL: CHEMBL50 | |
Canonical SMILES: Oc1cc(O)c2c(c1)oc(c(c2=O)O)c1ccc(c(c1)O)O | ||
Standard InChI: InChI=1S/C15H10O7/c16-7-4-10(19)12-11(5-7)22-15(14(21)13(12)20)6-1-2-8(17)9(18)3-6/h1-5,16-19,21H | ||
Molecular Formula: C15H10O7 | Mol. Weight: 302.2357 | Heavy Atoms: 22 |
Charge: 0 | Is Chiral: False | logP: 1.988 |
HBD: 5 | HBA: 7 | TPSA: 131.36 |
#Bonds: 24 | #Rotatable Bonds: 1 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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