PDB Entry (3mag)

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Visualizer: MichelaNGLo

PDB ID: 3mag Resolution: 1.8 Å Exp. Method: X-RAY DIFFRACTION
PMID: 10377383 DOI: 10.1073/pnas.96.13.7149
Protein
Protein Name: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase
Protein Class: VIRAL PROTEIN
Uniprot ID/ACC: P07617 (MCE_VACCW) Organism: Vaccinia virus
Gene Symbol: - Gene ID: 3707551
Pocket Descriptors
Volume: 259.776 Depth: 12.7373
Hydrophobicity: 0.755319 Drug Score: 0.324174
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-AMINO-3-METHYLPURINE
HET ID:   3MA PubChem:   447782
DrugBank:   - ChEMBL:   CHEMBL1230146
Canonical SMILES:   C[n+]1cnc(c2c1[nH]cn2)N
Standard InChI:   InChI=1S/C6H7N5/c1-11-3-10-5(7)4-6(11)9-2-8-4/h2-3H,1H3,(H2,7,8,9)/p+1
Molecular Formula:   C6H8N5+ Mol. Weight:   150.16122 Heavy Atoms:   11
Charge:   1 Is Chiral:   False logP:   -0.0542
HBD:   2 HBA:   3 TPSA:   71.47
#Bonds:   13 #Rotatable Bonds:   0 Shape Complexity:   0.16666667
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 86000 nM
Binding MOAD Kd : 86000 nM