PDB Entry (3mag) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3mag | Resolution: 1.8 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 10377383 | DOI: 10.1073/pnas.96.13.7149 | |
Protein |
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Protein Name: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase | |
Protein Class: VIRAL PROTEIN | |
Uniprot ID/ACC: P07617 (MCE_VACCW) | Organism: Vaccinia virus |
Gene Symbol: - | Gene ID: 3707551 |
Pocket Descriptors | |
Volume: 259.776 | Depth: 12.7373 |
Hydrophobicity: 0.755319 | Drug Score: 0.324174 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-AMINO-3-METHYLPURINE | ||
HET ID: 3MA | PubChem: 447782 | |
DrugBank: - | ChEMBL: CHEMBL1230146 | |
Canonical SMILES: C[n+]1cnc(c2c1[nH]cn2)N | ||
Standard InChI: InChI=1S/C6H7N5/c1-11-3-10-5(7)4-6(11)9-2-8-4/h2-3H,1H3,(H2,7,8,9)/p+1 | ||
Molecular Formula: C6H8N5+ | Mol. Weight: 150.16122 | Heavy Atoms: 11 |
Charge: 1 | Is Chiral: False | logP: -0.0542 |
HBD: 2 | HBA: 3 | TPSA: 71.47 |
#Bonds: 13 | #Rotatable Bonds: 0 | Shape Complexity: 0.16666667 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 86000 nM |
Binding MOAD | Kd : 86000 nM |