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PDB Entry (3ix1) Download |
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Visualizer: MichelaNGLo |
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| PDB ID: 3ix1 | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
| PMID: 20873853 | DOI: 10.1021/bi101209t | |
Protein |
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| Protein Name: Formylaminopyrimidine-binding protein | |
| Protein Class: TRANSPORTER | |
| Uniprot ID/ACC: Q9K9G5 (THIY_BACHD) | Organism: Bacillus halodurans |
| Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
| Volume: 713.728 | Depth: 23.8401 |
| Hydrophobicity: 0.745192 | Drug Score: 0.415878 |
| Pocket Similarity: Calculate | |
Ligand |
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| Ligand Name: N-[(4-amino-2-methylpyrimidin-5-yl)methyl]formamide | ||
| HET ID: NFM | PubChem: 597195 | |
| DrugBank: - | ChEMBL: CHEMBL1234697 | |
| Canonical SMILES: O=CNCc1cnc(nc1N)C | ||
| Standard InChI: InChI=1S/C7H10N4O/c1-5-10-3-6(2-9-4-12)7(8)11-5/h3-4H,2H2,1H3,(H,9,12)(H2,8,10,11) | ||
| Molecular Formula: C7H10N4O | Mol. Weight: 166.1805 | Heavy Atoms: 12 |
| Charge: 0 | Is Chiral: False | logP: 1.2212 |
| HBD: 2 | HBA: 5 | TPSA: 80.9 |
| #Bonds: 12 | #Rotatable Bonds: 3 | Shape Complexity: 0.2857143 |
| Stereocomplexity: 0.0 | Ligand Type: Small Molecule | |
Binding Affinity |
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| Database Name | Value |
| Binding MOAD | Kd : 200 nM |