PDB Entry (3ix1)

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Visualizer: MichelaNGLo

PDB ID: 3ix1 Resolution: 2.4 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20873853 DOI: 10.1021/bi101209t
Protein
Protein Name: Formylaminopyrimidine-binding protein
Protein Class: TRANSPORTER
Uniprot ID/ACC: Q9K9G5 (THIY_BACHD) Organism: Bacillus halodurans
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 713.728 Depth: 23.8401
Hydrophobicity: 0.745192 Drug Score: 0.415878
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[(4-amino-2-methylpyrimidin-5-yl)methyl]formamide
HET ID:   NFM PubChem:   597195
DrugBank:   - ChEMBL:   CHEMBL1234697
Canonical SMILES:   O=CNCc1cnc(nc1N)C
Standard InChI:   InChI=1S/C7H10N4O/c1-5-10-3-6(2-9-4-12)7(8)11-5/h3-4H,2H2,1H3,(H,9,12)(H2,8,10,11)
Molecular Formula:   C7H10N4O Mol. Weight:   166.1805 Heavy Atoms:   12
Charge:   0 Is Chiral:   False logP:   1.2212
HBD:   2 HBA:   5 TPSA:   80.9
#Bonds:   12 #Rotatable Bonds:   3 Shape Complexity:   0.2857143
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 200 nM