PDB Entry (3ebo) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 3ebo | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23279842 | DOI: 10.1016/j.fct.2012.12.030 | |
Protein |
|
Protein Name: Glycogen phosphorylase, muscle form | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P00489 (PYGM_RABIT) | Organism: Oryctolagus cuniculus |
Gene Symbol: - | Gene ID: 100008972 |
Pocket Descriptors | |
Volume: 158.208 | Depth: 12.1934 |
Hydrophobicity: 0.734043 | Drug Score: 0.226346 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: chrysin | ||
HET ID: 57D | PubChem: 5281607 | |
DrugBank: DB15581 | ChEMBL: CHEMBL117 | |
Canonical SMILES: Oc1cc(O)c2c(c1)oc(cc2=O)c1ccccc1 | ||
Standard InChI: InChI=1S/C15H10O4/c16-10-6-11(17)15-12(18)8-13(19-14(15)7-10)9-4-2-1-3-5-9/h1-8,16-17H | ||
Molecular Formula: C15H10O4 | Mol. Weight: 254.2375 | Heavy Atoms: 19 |
Charge: 0 | Is Chiral: False | logP: 2.8712 |
HBD: 2 | HBA: 4 | TPSA: 70.67 |
#Bonds: 21 | #Rotatable Bonds: 1 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
|
Database Name | Value |
PDBBind | Ki : 19010 nM |