PDB Entry (3ebo)

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Visualizer: MichelaNGLo

PDB ID: 3ebo Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23279842 DOI: 10.1016/j.fct.2012.12.030
Protein
Protein Name: Glycogen phosphorylase, muscle form
Protein Class: TRANSFERASE
Uniprot ID/ACC: P00489 (PYGM_RABIT) Organism: Oryctolagus cuniculus
Gene Symbol: - Gene ID: 100008972
Pocket Descriptors
Volume: 158.208 Depth: 12.1934
Hydrophobicity: 0.734043 Drug Score: 0.226346
Pocket Similarity: Calculate
Ligand
Ligand Name:   chrysin
HET ID:   57D PubChem:   5281607
DrugBank:   DB15581 ChEMBL:   CHEMBL117
Canonical SMILES:   Oc1cc(O)c2c(c1)oc(cc2=O)c1ccccc1
Standard InChI:   InChI=1S/C15H10O4/c16-10-6-11(17)15-12(18)8-13(19-14(15)7-10)9-4-2-1-3-5-9/h1-8,16-17H
Molecular Formula:   C15H10O4 Mol. Weight:   254.2375 Heavy Atoms:   19
Charge:   0 Is Chiral:   False logP:   2.8712
HBD:   2 HBA:   4 TPSA:   70.67
#Bonds:   21 #Rotatable Bonds:   1 Shape Complexity:   0.0
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 19010 nM