PDB Entry (3d27)

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PDB ID: 3d27 Resolution: 2.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 18785729 DOI: 10.1021/jm8005788
Protein
Protein Name: Methionine aminopeptidase
Protein Class: HYDROLASE
Uniprot ID/ACC: P0AE18 (MAP1_ECOLI) Organism: Escherichia coli
Gene Symbol: - Gene ID: 49586016
Pocket Descriptors
Volume: 829.12 Depth: 23.779
Hydrophobicity: 0.669492 Drug Score: 0.398615
Pocket Similarity: Calculate
Ligand
Ligand Name:   4-(3-ethylthiophen-2-yl)benzene-1,2-diol
HET ID:   W29 PubChem:   24875311
DrugBank:   DB08718 ChEMBL:   CHEMBL445245
Canonical SMILES:   CCc1ccsc1c1ccc(c(c1)O)O
Standard InChI:   InChI=1S/C12H12O2S/c1-2-8-5-6-15-12(8)9-3-4-10(13)11(14)7-9/h3-7,13-14H,2H2,1H3
Molecular Formula:   C12H12O2S Mol. Weight:   220.28748 Heavy Atoms:   15
Charge:   0 Is Chiral:   False logP:   3.3887
HBD:   2 HBA:   3 TPSA:   68.7
#Bonds:   16 #Rotatable Bonds:   2 Shape Complexity:   0.16666667
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind IC50 : 55700 nM
Binding MOAD IC50 : 55700 nM