PDB Entry (3d27) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3d27 | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 18785729 | DOI: 10.1021/jm8005788 | |
Protein |
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Protein Name: Methionine aminopeptidase | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P0AE18 (MAP1_ECOLI) | Organism: Escherichia coli |
Gene Symbol: - | Gene ID: 49586016 |
Pocket Descriptors | |
Volume: 829.12 | Depth: 23.779 |
Hydrophobicity: 0.669492 | Drug Score: 0.398615 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 4-(3-ethylthiophen-2-yl)benzene-1,2-diol | ||
HET ID: W29 | PubChem: 24875311 | |
DrugBank: DB08718 | ChEMBL: CHEMBL445245 | |
Canonical SMILES: CCc1ccsc1c1ccc(c(c1)O)O | ||
Standard InChI: InChI=1S/C12H12O2S/c1-2-8-5-6-15-12(8)9-3-4-10(13)11(14)7-9/h3-7,13-14H,2H2,1H3 | ||
Molecular Formula: C12H12O2S | Mol. Weight: 220.28748 | Heavy Atoms: 15 |
Charge: 0 | Is Chiral: False | logP: 3.3887 |
HBD: 2 | HBA: 3 | TPSA: 68.7 |
#Bonds: 16 | #Rotatable Bonds: 2 | Shape Complexity: 0.16666667 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | IC50 : 55700 nM |
Binding MOAD | IC50 : 55700 nM |