PDB Entry (3bd7)

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Visualizer: MichelaNGLo

PDB ID: 3bd7 Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Glycogen phosphorylase, muscle form
Protein Class: TRANSFERASE
Uniprot ID/ACC: P00489 (PYGM_RABIT) Organism: Oryctolagus cuniculus
Gene Symbol: - Gene ID: 100008972
Pocket Descriptors
Volume: 85.696 Depth: 11.4739
Hydrophobicity: 0.707692 Drug Score: 0.165174
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione
HET ID:   CKB PubChem:   15613364
DrugBank:   - ChEMBL:   CHEMBL1231802
Canonical SMILES:   OC[C@H]1O[C@H]([C@@H]([C@H]([C@@H]1O)O)O)n1cc(C)c(=O)[nH]c1=O
Standard InChI:   InChI=1S/C11H16N2O7/c1-4-2-13(11(19)12-9(4)18)10-8(17)7(16)6(15)5(3-14)20-10/h2,5-8,10,14-17H,3H2,1H3,(H,12,18,19)/t5-,6-,7+,8-,10-/m1/s1
Molecular Formula:   C11H16N2O7 Mol. Weight:   288.25394 Heavy Atoms:   20
Charge:   0 Is Chiral:   True logP:   -3.1826
HBD:   5 HBA:   8 TPSA:   145.01
#Bonds:   27 #Rotatable Bonds:   2 Shape Complexity:   0.6363636
Stereocomplexity:   0.45454547 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 6600nM