PDB Entry (3bd7) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3bd7 | Resolution: 1.9 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Glycogen phosphorylase, muscle form | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P00489 (PYGM_RABIT) | Organism: Oryctolagus cuniculus |
Gene Symbol: - | Gene ID: 100008972 |
Pocket Descriptors | |
Volume: 85.696 | Depth: 11.4739 |
Hydrophobicity: 0.707692 | Drug Score: 0.165174 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione | ||
HET ID: CKB | PubChem: 15613364 | |
DrugBank: - | ChEMBL: CHEMBL1231802 | |
Canonical SMILES: OC[C@H]1O[C@H]([C@@H]([C@H]([C@@H]1O)O)O)n1cc(C)c(=O)[nH]c1=O | ||
Standard InChI: InChI=1S/C11H16N2O7/c1-4-2-13(11(19)12-9(4)18)10-8(17)7(16)6(15)5(3-14)20-10/h2,5-8,10,14-17H,3H2,1H3,(H,12,18,19)/t5-,6-,7+,8-,10-/m1/s1 | ||
Molecular Formula: C11H16N2O7 | Mol. Weight: 288.25394 | Heavy Atoms: 20 |
Charge: 0 | Is Chiral: True | logP: -3.1826 |
HBD: 5 | HBA: 8 | TPSA: 145.01 |
#Bonds: 27 | #Rotatable Bonds: 2 | Shape Complexity: 0.6363636 |
Stereocomplexity: 0.45454547 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | IC50 : 6600nM |