PDB Entry (2zi4) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2zi4 | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 18377927 | DOI: 10.1016/j.jmb.2008.02.061 | |
Protein |
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Protein Name: Deoxycytidine kinase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P27707 (DCK_HUMAN) | Organism: Homo sapiens |
Gene Symbol: DCK | Gene ID: 1633 |
Pocket Descriptors | |
Volume: 1354.88 | Depth: 38.3792 |
Hydrophobicity: 0.715625 | Drug Score: 0.947886 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (2S,3R,5S)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol | ||
HET ID: 3L1 | PubChem: 489519 | |
DrugBank: - | ChEMBL: CHEMBL1230141 | |
Canonical SMILES: OC[C@@H]1O[C@@H](C[C@H]1O)n1cnc2c1ncnc2N | ||
Standard InChI: InChI=1S/C10H13N5O3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(17)6(2-16)18-7/h3-7,16-17H,1-2H2,(H2,11,12,13)/t5-,6+,7+/m1/s1 | ||
Molecular Formula: C10H13N5O3 | Mol. Weight: 251.24191 | Heavy Atoms: 18 |
Charge: 0 | Is Chiral: True | logP: -0.3696 |
HBD: 3 | HBA: 8 | TPSA: 119.31 |
#Bonds: 23 | #Rotatable Bonds: 2 | Shape Complexity: 0.5 |
Stereocomplexity: 0.3 | Ligand Type: Small Molecule |
Binding Affinity |
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