PDB Entry (1osn) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1osn | Resolution: 3.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 12686543 | DOI: 10.1074/jbc.M302025200 | |
Protein |
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Protein Name: Thymidine kinase | |
Protein Class: VIRAL PROTEIN | |
Uniprot ID/ACC: P0C0E6 (KITH_VZVO) | Organism: Varicella-zoster virus |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 205.248 | Depth: 17.4145 |
Hydrophobicity: 0.702703 | Drug Score: 0.0367843 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE | ||
HET ID: BVP | PubChem: 6505368 | |
DrugBank: DB04438 | ChEMBL: CHEMBL1231519 | |
Canonical SMILES: Br/C=C/c1cn([C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)c(=O)[nH]c1=O | ||
Standard InChI: InChI=1S/C11H14BrN2O8P/c12-2-1-6-4-14(11(17)13-10(6)16)9-3-7(15)8(22-9)5-21-23(18,19)20/h1-2,4,7-9,15H,3,5H2,(H,13,16,17)(H2,18,19,20)/b2-1+/t7-,8+,9+/m0/s1 | ||
Molecular Formula: C11H14BrN2O8P | Mol. Weight: 413.11523 | Heavy Atoms: 23 |
Charge: 0 | Is Chiral: True | logP: -0.3401 |
HBD: 4 | HBA: 9 | TPSA: 160.89 |
#Bonds: 28 | #Rotatable Bonds: 5 | Shape Complexity: 0.45454547 |
Stereocomplexity: 0.27272728 | Ligand Type: Small Molecule |
Binding Affinity |
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