PDB Entry (1osn)

Download

Visualizer: MichelaNGLo

PDB ID: 1osn Resolution: 3.2 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12686543 DOI: 10.1074/jbc.M302025200
Protein
Protein Name: Thymidine kinase
Protein Class: VIRAL PROTEIN
Uniprot ID/ACC: P0C0E6 (KITH_VZVO) Organism: Varicella-zoster virus
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 205.248 Depth: 17.4145
Hydrophobicity: 0.702703 Drug Score: 0.0367843
Pocket Similarity: Calculate
Ligand
Ligand Name:   (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
HET ID:   BVP PubChem:   6505368
DrugBank:   DB04438 ChEMBL:   CHEMBL1231519
Canonical SMILES:   Br/C=C/c1cn([C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)c(=O)[nH]c1=O
Standard InChI:   InChI=1S/C11H14BrN2O8P/c12-2-1-6-4-14(11(17)13-10(6)16)9-3-7(15)8(22-9)5-21-23(18,19)20/h1-2,4,7-9,15H,3,5H2,(H,13,16,17)(H2,18,19,20)/b2-1+/t7-,8+,9+/m0/s1
Molecular Formula:   C11H14BrN2O8P Mol. Weight:   413.11523 Heavy Atoms:   23
Charge:   0 Is Chiral:   True logP:   -0.3401
HBD:   4 HBA:   9 TPSA:   160.89
#Bonds:   28 #Rotatable Bonds:   5 Shape Complexity:   0.45454547
Stereocomplexity:   0.27272728 Ligand Type:   Small Molecule
Binding Affinity
-