PDB Entry (1gfz) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 1gfz | Resolution: 2.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 10924512 | DOI: 10.1074/jbc.M004485200 | |
Protein |
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Protein Name: Glycogen phosphorylase, muscle form | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: P00489 (PYGM_RABIT) | Organism: Oryctolagus cuniculus |
Gene Symbol: - | Gene ID: 100008972 |
Pocket Descriptors | |
Volume: 155.264 | Depth: 15.0961 |
Hydrophobicity: 0.714286 | Drug Score: 0.059694 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: CAFFEINE | ||
HET ID: CFF | PubChem: 2519 | |
DrugBank: DB00201 | ChEMBL: CHEMBL113 | |
Canonical SMILES: Cn1cnc2c1c(=O)n(C)c(=O)n2C | ||
Standard InChI: InChI=1S/C8H10N4O2/c1-10-4-9-6-5(10)7(13)12(3)8(14)11(6)2/h4H,1-3H3 | ||
Molecular Formula: C8H10N4O2 | Mol. Weight: 194.1906 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: False | logP: -1.0293 |
HBD: 0 | HBA: 6 | TPSA: 61.82 |
#Bonds: 15 | #Rotatable Bonds: 0 | Shape Complexity: 0.375 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 100000 nM |
BindingDB | IC50 : 100000 nM, IC50 : 114000 nM, IC50 : 229000 nM, IC50 : 114000 nM, IC50 : 144000 nM, IC50 : 83100 nM, IC50 : 74900 nM, IC50 : 75300 nM, IC50 : 648000 nM |
Binding MOAD | Ki : 150000 nM |