PDB Entry (2vpp) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2vpp | Resolution: 2.2 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 19285960 | DOI: 10.1016/j.bbrc.2009.03.041 | |
Protein |
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Protein Name: Deoxynucleoside kinase | |
Protein Class: TRANSFERASE | |
Uniprot ID/ACC: Q9XZT6 (DNK_DROME) | Organism: Drosophila melanogaster |
Gene Symbol: dnk | Gene ID: 42273 |
Pocket Descriptors | |
Volume: 754.944 | Depth: 22.9539 |
Hydrophobicity: 0.718954 | Drug Score: 0.561358 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: GEMCITABINE | ||
HET ID: GEO | PubChem: 60750 | |
DrugBank: DB00441 | ChEMBL: CHEMBL888 | |
Canonical SMILES: OC[C@H]1O[C@H](C([C@@H]1O)(F)F)n1ccc(nc1=O)N | ||
Standard InChI: InChI=1S/C9H11F2N3O4/c10-9(11)6(16)4(3-15)18-7(9)14-2-1-5(12)13-8(14)17/h1-2,4,6-7,15-16H,3H2,(H2,12,13,17)/t4-,6-,7-/m1/s1 | ||
Molecular Formula: C9H11F2N3O4 | Mol. Weight: 263.19815 | Heavy Atoms: 18 |
Charge: 0 | Is Chiral: True | logP: -0.7074 |
HBD: 3 | HBA: 7 | TPSA: 110.6 |
#Bonds: 22 | #Rotatable Bonds: 2 | Shape Complexity: 0.5555556 |
Stereocomplexity: 0.33333334 | Ligand Type: Small Molecule |
Binding Affinity |
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