PDB Entry (6hh5) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6hh5 | Resolution: 1.95 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30472116 | DOI: 10.1016/j.chembiol.2018.11.001 | |
Protein |
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Protein Name: ADP-ribose glycohydrolase ARH3 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: H3BCW1 (ADPRS_LATCH) | Organism: Latimeria chalumnae |
Gene Symbol: - | Gene ID: 102353686 |
Pocket Descriptors | |
Volume: 892.096 | Depth: 27.7039 |
Hydrophobicity: 0.666667 | Drug Score: 0.513821 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: Adenosine Diphosphate (Hydroxymethyl)pyrrolidine monoalcohol | ||
HET ID: A3R | PubChem: 10951514 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O[C@H]1CN[C@@H](C1)CO[P@](=O)(O[P@](=O)(OC[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N)O)O | ||
Standard InChI: InChI=1S/C15H24N6O11P2/c16-13-10-14(19-5-18-13)21(6-20-10)15-12(24)11(23)9(31-15)4-30-34(27,28)32-33(25,26)29-3-7-1-8(22)2-17-7/h5-9,11-12,15,17,22-24H,1-4H2,(H,25,26)(H,27,28)(H2,16,18,19)/t7-,8+,9+,11+,12+,15+/m0/s1 | ||
Molecular Formula: C15H24N6O11P2 | Mol. Weight: 526.33215 | Heavy Atoms: 34 |
Charge: 0 | Is Chiral: True | logP: -1.0889 |
HBD: 7 | HBA: 17 | TPSA: 273.48 |
#Bonds: 43 | #Rotatable Bonds: 9 | Shape Complexity: 0.6666667 |
Stereocomplexity: 0.53333336 | Ligand Type: Small Molecule |
Binding Affinity |
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