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PDB Entry (4ufz) Download |
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Visualizer: MichelaNGLo |
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| PDB ID: 4ufz | Resolution: 2.33 Å | Exp. Method: X-RAY DIFFRACTION |
| PMID: 26463129 | DOI: 10.1016/j.bmcl.2015.09.075 | |
Protein |
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| Protein Name: DNA ligase | |
| Protein Class: LIGASE | |
| Uniprot ID/ACC: P43813 (DNLJ_HAEIN) | Organism: Haemophilus influenzae |
| Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
| Volume: 766.464 | Depth: 24.0965 |
| Hydrophobicity: 0.7 | Drug Score: 0.396356 |
| Pocket Similarity: Calculate | |
Ligand |
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| Ligand Name: 1-(2,4-dimethylbenzyl)-6-oxo-1,6-dihydropyridine-3-carboxamide | ||
| HET ID: IWH | PubChem: 49835969 | |
| DrugBank: - | ChEMBL: CHEMBL1233696 | |
| Canonical SMILES: Cc1ccc(c(c1)C)Cn1cc(ccc1=O)C(=O)N | ||
| Standard InChI: InChI=1S/C15H16N2O2/c1-10-3-4-12(11(2)7-10)8-17-9-13(15(16)19)5-6-14(17)18/h3-7,9H,8H2,1-2H3,(H2,16,19) | ||
| Molecular Formula: C15H16N2O2 | Mol. Weight: 256.29974 | Heavy Atoms: 19 |
| Charge: 0 | Is Chiral: False | logP: 2.3126 |
| HBD: 1 | HBA: 4 | TPSA: 65.09 |
| #Bonds: 20 | #Rotatable Bonds: 3 | Shape Complexity: 0.2 |
| Stereocomplexity: 0.0 | Ligand Type: Small Molecule | |
Binding Affinity |
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