PDB Entry (6j10) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6j10 | Resolution: 2.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31097716 | DOI: 10.1038/s41467-019-10200-5 | |
Protein |
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Protein Name: Capsid protein | |
Protein Class: VIRAL PROTEIN | |
Uniprot ID/ACC: P03147 (CAPSD_HBVD1) | Organism: Hepatitis B virus genotype D subtype adw |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 65.344 | Depth: 8.39999 |
Hydrophobicity: 0.857143 | Drug Score: 0.815033 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 6-cyclohexyl-4-methyl-1-oxidanyl-pyridin-2-one | ||
HET ID: B4O | PubChem: 2749 | |
DrugBank: DB01188 | ChEMBL: CHEMBL1413 | |
Canonical SMILES: Cc1cc(C2CCCCC2)n(c(=O)c1)O | ||
Standard InChI: InChI=1S/C12H17NO2/c1-9-7-11(13(15)12(14)8-9)10-5-3-2-4-6-10/h7-8,10,15H,2-6H2,1H3 | ||
Molecular Formula: C12H17NO2 | Mol. Weight: 207.26888 | Heavy Atoms: 15 |
Charge: 0 | Is Chiral: False | logP: 2.4417 |
HBD: 1 | HBA: 3 | TPSA: 42.23 |
#Bonds: 16 | #Rotatable Bonds: 1 | Shape Complexity: 0.5833333 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Kd : 445 nM |