PDB Entry (6j10)

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Visualizer: MichelaNGLo

PDB ID: 6j10 Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31097716 DOI: 10.1038/s41467-019-10200-5
Protein
Protein Name: Capsid protein
Protein Class: VIRAL PROTEIN
Uniprot ID/ACC: P03147 (CAPSD_HBVD1) Organism: Hepatitis B virus genotype D subtype adw
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 65.344 Depth: 8.39999
Hydrophobicity: 0.857143 Drug Score: 0.815033
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-cyclohexyl-4-methyl-1-oxidanyl-pyridin-2-one
HET ID:   B4O PubChem:   2749
DrugBank:   DB01188 ChEMBL:   CHEMBL1413
Canonical SMILES:   Cc1cc(C2CCCCC2)n(c(=O)c1)O
Standard InChI:   InChI=1S/C12H17NO2/c1-9-7-11(13(15)12(14)8-9)10-5-3-2-4-6-10/h7-8,10,15H,2-6H2,1H3
Molecular Formula:   C12H17NO2 Mol. Weight:   207.26888 Heavy Atoms:   15
Charge:   0 Is Chiral:   False logP:   2.4417
HBD:   1 HBA:   3 TPSA:   42.23
#Bonds:   16 #Rotatable Bonds:   1 Shape Complexity:   0.5833333
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Kd : 445 nM